Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.66■□□□□ 0.58
USP41Q3LFD5 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.66■□□□□ 0.58
USP41Q3LFD5 MTDHP5-201ENST00000598980 586 ntBASIC18.66■□□□□ 0.58
USP41Q3LFD5 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.66■□□□□ 0.58
USP41Q3LFD5 BCL2-203ENST00000589955 5011 ntBASIC18.66■□□□□ 0.58
USP41Q3LFD5 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.66■□□□□ 0.58
USP41Q3LFD5 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP41Q3LFD5 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.66■□□□□ 0.58
USP41Q3LFD5 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP41Q3LFD5 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP41Q3LFD5 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.66■□□□□ 0.58
USP41Q3LFD5 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.66■□□□□ 0.58
USP41Q3LFD5 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP41Q3LFD5 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP41Q3LFD5 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
USP41Q3LFD5 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.66■□□□□ 0.58
USP41Q3LFD5 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.65■□□□□ 0.58
USP41Q3LFD5 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.65■□□□□ 0.58
USP41Q3LFD5 LTB4R2-202ENST00000528054 3092 ntBASIC18.65■□□□□ 0.58
USP41Q3LFD5 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP41Q3LFD5 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USP41Q3LFD5 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USP41Q3LFD5 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
USP41Q3LFD5 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP41Q3LFD5 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
USP41Q3LFD5 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.65■□□□□ 0.58
USP41Q3LFD5 RPS15P9-201ENST00000494093 319 ntBASIC18.65■□□□□ 0.58
USP41Q3LFD5 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.65■□□□□ 0.58
USP41Q3LFD5 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.65■□□□□ 0.58
USP41Q3LFD5 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
USP41Q3LFD5 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.65■□□□□ 0.58
USP41Q3LFD5 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.65■□□□□ 0.58
USP41Q3LFD5 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.65■□□□□ 0.58
USP41Q3LFD5 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC18.65■□□□□ 0.58
USP41Q3LFD5 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
USP41Q3LFD5 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
USP41Q3LFD5 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP41Q3LFD5 AP000997.3-201ENST00000623333 2250 ntBASIC18.65■□□□□ 0.58
USP41Q3LFD5 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP41Q3LFD5 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
USP41Q3LFD5 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.58
USP41Q3LFD5 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
USP41Q3LFD5 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
USP41Q3LFD5 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP41Q3LFD5 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP41Q3LFD5 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
USP41Q3LFD5 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP41Q3LFD5 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.64■□□□□ 0.57
USP41Q3LFD5 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP41Q3LFD5 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.64■□□□□ 0.57
USP41Q3LFD5 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP41Q3LFD5 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.64■□□□□ 0.57
USP41Q3LFD5 AC108073.2-201ENST00000464002 357 ntBASIC18.64■□□□□ 0.57
USP41Q3LFD5 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.64■□□□□ 0.57
USP41Q3LFD5 AC002558.1-201ENST00000488906 803 ntBASIC18.64■□□□□ 0.57
USP41Q3LFD5 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.64■□□□□ 0.57
USP41Q3LFD5 IGHV3-65-201ENST00000523210 341 ntBASIC18.64■□□□□ 0.57
USP41Q3LFD5 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.64■□□□□ 0.57
USP41Q3LFD5 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.64■□□□□ 0.57
USP41Q3LFD5 AC008667.4-201ENST00000607370 168 ntBASIC18.64■□□□□ 0.57
USP41Q3LFD5 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
USP41Q3LFD5 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
USP41Q3LFD5 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP41Q3LFD5 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP41Q3LFD5 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
USP41Q3LFD5 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.64■□□□□ 0.57
USP41Q3LFD5 AC009336.1-201ENST00000608941 1553 ntBASIC18.64■□□□□ 0.57
USP41Q3LFD5 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP41Q3LFD5 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP41Q3LFD5 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP41Q3LFD5 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP41Q3LFD5 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP41Q3LFD5 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP41Q3LFD5 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP41Q3LFD5 MYCLP1-201ENST00000372451 1075 ntBASIC18.63■□□□□ 0.57
USP41Q3LFD5 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.63■□□□□ 0.57
USP41Q3LFD5 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 KRT18P2-201ENST00000447938 1258 ntBASIC18.63■□□□□ 0.57
USP41Q3LFD5 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 MIR4751-201ENST00000578027 74 ntBASIC18.63■□□□□ 0.57
USP41Q3LFD5 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 AC079781.4-201ENST00000641908 219 ntBASIC18.63■□□□□ 0.57
USP41Q3LFD5 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.63■□□□□ 0.57
USP41Q3LFD5 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP41Q3LFD5 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP41Q3LFD5 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP41Q3LFD5 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP41Q3LFD5 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms