Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.32■□□□□ 0.52
EPHB3P54753 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.32■□□□□ 0.52
EPHB3P54753 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
EPHB3P54753 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.32■□□□□ 0.52
EPHB3P54753 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.32■□□□□ 0.52
EPHB3P54753 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.32■□□□□ 0.52
EPHB3P54753 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
EPHB3P54753 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.32■□□□□ 0.52
EPHB3P54753 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
EPHB3P54753 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.32■□□□□ 0.52
EPHB3P54753 AC138028.4-201ENST00000564984 1845 ntBASIC18.32■□□□□ 0.52
EPHB3P54753 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.32■□□□□ 0.52
EPHB3P54753 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
EPHB3P54753 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
EPHB3P54753 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
EPHB3P54753 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
EPHB3P54753 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.32■□□□□ 0.52
EPHB3P54753 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
EPHB3P54753 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.31■□□□□ 0.52
EPHB3P54753 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
EPHB3P54753 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
EPHB3P54753 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.31■□□□□ 0.52
EPHB3P54753 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.31■□□□□ 0.52
EPHB3P54753 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
EPHB3P54753 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.31■□□□□ 0.52
EPHB3P54753 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
EPHB3P54753 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
EPHB3P54753 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
EPHB3P54753 RPSAP43-201ENST00000402237 625 ntBASIC18.31■□□□□ 0.52
EPHB3P54753 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.31■□□□□ 0.52
EPHB3P54753 LINC00982-205ENST00000420957 435 ntBASIC18.31■□□□□ 0.52
EPHB3P54753 GPX1P2-201ENST00000429271 606 ntBASIC18.31■□□□□ 0.52
EPHB3P54753 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.31■□□□□ 0.52
EPHB3P54753 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.31■□□□□ 0.52
EPHB3P54753 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.31■□□□□ 0.52
EPHB3P54753 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.31■□□□□ 0.52
EPHB3P54753 AL691403.2-201ENST00000618460 490 ntBASIC18.31■□□□□ 0.52
EPHB3P54753 AL805961.1-202ENST00000641562 540 ntBASIC18.31■□□□□ 0.52
EPHB3P54753 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
EPHB3P54753 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.31■□□□□ 0.52
EPHB3P54753 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
EPHB3P54753 GPR89P-201ENST00000407924 1495 ntBASIC18.31■□□□□ 0.52
EPHB3P54753 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
EPHB3P54753 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
EPHB3P54753 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
EPHB3P54753 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.31■□□□□ 0.52
EPHB3P54753 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
EPHB3P54753 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
EPHB3P54753 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
EPHB3P54753 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.3■□□□□ 0.52
EPHB3P54753 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
EPHB3P54753 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
EPHB3P54753 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
EPHB3P54753 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.3■□□□□ 0.52
EPHB3P54753 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
EPHB3P54753 AC104581.1-202ENST00000635932 2618 ntBASIC18.3■□□□□ 0.52
EPHB3P54753 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.3■□□□□ 0.52
EPHB3P54753 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
EPHB3P54753 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
EPHB3P54753 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
EPHB3P54753 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
EPHB3P54753 PRSS29P-201ENST00000440800 595 ntBASIC18.3■□□□□ 0.52
EPHB3P54753 VN2R19P-201ENST00000442399 1052 ntBASIC18.3■□□□□ 0.52
EPHB3P54753 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.3■□□□□ 0.52
EPHB3P54753 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.3■□□□□ 0.52
EPHB3P54753 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.3■□□□□ 0.52
EPHB3P54753 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.3■□□□□ 0.52
EPHB3P54753 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.3■□□□□ 0.52
EPHB3P54753 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.3■□□□□ 0.52
EPHB3P54753 MTDHP5-201ENST00000598980 586 ntBASIC18.3■□□□□ 0.52
EPHB3P54753 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.3■□□□□ 0.52
EPHB3P54753 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
EPHB3P54753 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.3■□□□□ 0.52
EPHB3P54753 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
EPHB3P54753 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
EPHB3P54753 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
EPHB3P54753 AC090340.1-201ENST00000620778 4980 ntBASIC18.3■□□□□ 0.52
EPHB3P54753 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
EPHB3P54753 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
EPHB3P54753 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
EPHB3P54753 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.29■□□□□ 0.52
EPHB3P54753 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.29■□□□□ 0.52
EPHB3P54753 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
EPHB3P54753 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
EPHB3P54753 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
EPHB3P54753 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
EPHB3P54753 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.29■□□□□ 0.52
EPHB3P54753 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
EPHB3P54753 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.29■□□□□ 0.52
EPHB3P54753 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
EPHB3P54753 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
EPHB3P54753 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
EPHB3P54753 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.29■□□□□ 0.52
EPHB3P54753 AC009113.1-201ENST00000570267 2443 ntBASIC18.29■□□□□ 0.52
EPHB3P54753 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.29■□□□□ 0.52
EPHB3P54753 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.29■□□□□ 0.52
EPHB3P54753 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.29■□□□□ 0.52
EPHB3P54753 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
EPHB3P54753 KRT18P2-201ENST00000447938 1258 ntBASIC18.29■□□□□ 0.52
EPHB3P54753 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms