Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTCFP49711 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC20.27■□□□□ 0.84
CTCFP49711 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTCFP49711 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CTCFP49711 AL355306.1-201ENST00000415580 579 ntBASIC20.27■□□□□ 0.84
CTCFP49711 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC20.27■□□□□ 0.84
CTCFP49711 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC20.27■□□□□ 0.84
CTCFP49711 AC097493.3-201ENST00000509725 367 ntBASIC20.27■□□□□ 0.84
CTCFP49711 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC20.27■□□□□ 0.84
CTCFP49711 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC20.27■□□□□ 0.84
CTCFP49711 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC20.27■□□□□ 0.84
CTCFP49711 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CTCFP49711 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.27■□□□□ 0.84
CTCFP49711 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CTCFP49711 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CTCFP49711 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTCFP49711 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CTCFP49711 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTCFP49711 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTCFP49711 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC20.26■□□□□ 0.83
CTCFP49711 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
CTCFP49711 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTCFP49711 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTCFP49711 CALY-202ENST00000368555 783 ntTSL 2 BASIC20.26■□□□□ 0.83
CTCFP49711 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CTCFP49711 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC20.26■□□□□ 0.83
CTCFP49711 AC069120.2-201ENST00000524091 540 ntBASIC20.26■□□□□ 0.83
CTCFP49711 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC20.26■□□□□ 0.83
CTCFP49711 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CTCFP49711 MIR4525-201ENST00000580000 75 ntBASIC20.26■□□□□ 0.83
CTCFP49711 BSG-214ENST00000614867 960 ntTSL 3 BASIC20.26■□□□□ 0.83
CTCFP49711 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CTCFP49711 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTCFP49711 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTCFP49711 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTCFP49711 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTCFP49711 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CTCFP49711 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CTCFP49711 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTCFP49711 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CTCFP49711 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CTCFP49711 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
CTCFP49711 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTCFP49711 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTCFP49711 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTCFP49711 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTCFP49711 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTCFP49711 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CTCFP49711 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CTCFP49711 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTCFP49711 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CTCFP49711 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CTCFP49711 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CTCFP49711 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.25■□□□□ 0.83
CTCFP49711 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC20.25■□□□□ 0.83
CTCFP49711 RBPMS2P1-201ENST00000437762 623 ntBASIC20.25■□□□□ 0.83
CTCFP49711 FAM8A2P-201ENST00000528813 1142 ntBASIC20.25■□□□□ 0.83
CTCFP49711 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC20.25■□□□□ 0.83
CTCFP49711 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC20.25■□□□□ 0.83
CTCFP49711 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC20.25■□□□□ 0.83
CTCFP49711 RETN-203ENST00000629642 400 ntTSL 5 BASIC20.25■□□□□ 0.83
CTCFP49711 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC20.25■□□□□ 0.83
CTCFP49711 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CTCFP49711 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CTCFP49711 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
CTCFP49711 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.25■□□□□ 0.83
CTCFP49711 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CTCFP49711 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTCFP49711 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CTCFP49711 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTCFP49711 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTCFP49711 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTCFP49711 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CTCFP49711 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC20.24■□□□□ 0.83
CTCFP49711 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTCFP49711 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTCFP49711 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.24■□□□□ 0.83
CTCFP49711 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTCFP49711 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTCFP49711 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTCFP49711 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTCFP49711 PTCHD3P3-201ENST00000403073 906 ntBASIC20.24■□□□□ 0.83
CTCFP49711 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC20.24■□□□□ 0.83
CTCFP49711 GPS2P2-201ENST00000430745 888 ntBASIC20.24■□□□□ 0.83
CTCFP49711 AC103564.2-201ENST00000432853 1299 ntBASIC20.24■□□□□ 0.83
CTCFP49711 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC20.24■□□□□ 0.83
CTCFP49711 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTCFP49711 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CTCFP49711 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CTCFP49711 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC20.24■□□□□ 0.83
CTCFP49711 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTCFP49711 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC20.24■□□□□ 0.83
CTCFP49711 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CTCFP49711 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTCFP49711 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.24■□□□□ 0.83
CTCFP49711 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTCFP49711 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTCFP49711 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CTCFP49711 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CTCFP49711 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms