Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.56■□□□□ 0.24
RFX3P48380 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
RFX3P48380 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.56■□□□□ 0.24
RFX3P48380 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
RFX3P48380 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.56■□□□□ 0.24
RFX3P48380 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX3P48380 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.56■□□□□ 0.24
RFX3P48380 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC16.56■□□□□ 0.24
RFX3P48380 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.56■□□□□ 0.24
RFX3P48380 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.56■□□□□ 0.24
RFX3P48380 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.56■□□□□ 0.24
RFX3P48380 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.56■□□□□ 0.24
RFX3P48380 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
RFX3P48380 FAM86EP-206ENST00000510506 987 ntBASIC16.56■□□□□ 0.24
RFX3P48380 GUSBP12-201ENST00000513727 720 ntBASIC16.56■□□□□ 0.24
RFX3P48380 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.56■□□□□ 0.24
RFX3P48380 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.56■□□□□ 0.24
RFX3P48380 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.56■□□□□ 0.24
RFX3P48380 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.56■□□□□ 0.24
RFX3P48380 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.56■□□□□ 0.24
RFX3P48380 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
RFX3P48380 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.56■□□□□ 0.24
RFX3P48380 AC124864.1-201ENST00000623408 392 ntBASIC16.56■□□□□ 0.24
RFX3P48380 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX3P48380 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.56■□□□□ 0.24
RFX3P48380 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.56■□□□□ 0.24
RFX3P48380 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX3P48380 AC009949.1-201ENST00000623048 1830 ntBASIC16.56■□□□□ 0.24
RFX3P48380 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
RFX3P48380 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
RFX3P48380 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
RFX3P48380 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
RFX3P48380 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
RFX3P48380 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.55■□□□□ 0.24
RFX3P48380 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
RFX3P48380 IER3-202ENST00000376377 1350 ntBASIC16.55■□□□□ 0.24
RFX3P48380 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 BX276092.5-203ENST00000456199 560 ntBASIC16.55■□□□□ 0.24
RFX3P48380 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.55■□□□□ 0.24
RFX3P48380 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.55■□□□□ 0.24
RFX3P48380 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
RFX3P48380 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
RFX3P48380 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
RFX3P48380 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.55■□□□□ 0.24
RFX3P48380 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.55■□□□□ 0.24
RFX3P48380 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
RFX3P48380 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
RFX3P48380 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
RFX3P48380 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX3P48380 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.54■□□□□ 0.24
RFX3P48380 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
RFX3P48380 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX3P48380 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX3P48380 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX3P48380 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.54■□□□□ 0.24
RFX3P48380 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.54■□□□□ 0.24
RFX3P48380 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX3P48380 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.54■□□□□ 0.24
RFX3P48380 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RFX3P48380 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RFX3P48380 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RFX3P48380 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX3P48380 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX3P48380 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX3P48380 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX3P48380 MTCL1P1-201ENST00000446207 792 ntBASIC16.54■□□□□ 0.24
RFX3P48380 AC112698.1-201ENST00000510299 916 ntBASIC16.54■□□□□ 0.24
RFX3P48380 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.54■□□□□ 0.24
RFX3P48380 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.54■□□□□ 0.24
RFX3P48380 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.54■□□□□ 0.24
RFX3P48380 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC16.54■□□□□ 0.24
RFX3P48380 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
RFX3P48380 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.54■□□□□ 0.24
RFX3P48380 AC116407.2-201ENST00000613639 860 ntBASIC16.54■□□□□ 0.24
RFX3P48380 AL358472.4-201ENST00000633140 710 ntBASIC16.54■□□□□ 0.24
RFX3P48380 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.54■□□□□ 0.24
RFX3P48380 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX3P48380 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms