Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL645728.2-201ENST00000641974 660 ntBASIC22.95■■□□□ 1.26
COL18A1P39060 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC22.95■■□□□ 1.26
COL18A1P39060 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
COL18A1P39060 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
COL18A1P39060 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
COL18A1P39060 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC22.94■■□□□ 1.26
COL18A1P39060 SPDYE14P-201ENST00000442619 822 ntBASIC22.94■■□□□ 1.26
COL18A1P39060 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC22.94■■□□□ 1.26
COL18A1P39060 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
COL18A1P39060 TSFM-210ENST00000550559 897 ntTSL 5 BASIC22.94■■□□□ 1.26
COL18A1P39060 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
COL18A1P39060 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
COL18A1P39060 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC22.94■■□□□ 1.26
COL18A1P39060 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC22.94■■□□□ 1.26
COL18A1P39060 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
COL18A1P39060 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC22.94■■□□□ 1.26
COL18A1P39060 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC22.94■■□□□ 1.26
COL18A1P39060 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
COL18A1P39060 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC22.94■■□□□ 1.26
COL18A1P39060 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC22.94■■□□□ 1.26
COL18A1P39060 AL592309.1-201ENST00000443127 649 ntBASIC22.94■■□□□ 1.26
COL18A1P39060 CNN2P2-201ENST00000443536 909 ntBASIC22.94■■□□□ 1.26
COL18A1P39060 CNN2P3-201ENST00000450201 906 ntBASIC22.94■■□□□ 1.26
COL18A1P39060 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
COL18A1P39060 AL136317.3-201ENST00000618497 906 ntBASIC22.94■■□□□ 1.26
COL18A1P39060 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC22.94■■□□□ 1.26
COL18A1P39060 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
COL18A1P39060 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC22.93■■□□□ 1.26
COL18A1P39060 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
COL18A1P39060 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL18A1P39060 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL18A1P39060 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
COL18A1P39060 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
COL18A1P39060 AC055876.3-201ENST00000431496 288 ntBASIC22.93■■□□□ 1.26
COL18A1P39060 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC22.93■■□□□ 1.26
COL18A1P39060 RN7SL204P-201ENST00000582831 262 ntBASIC22.93■■□□□ 1.26
COL18A1P39060 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL18A1P39060 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC22.93■■□□□ 1.26
COL18A1P39060 AC138649.4-201ENST00000612222 287 ntBASIC22.93■■□□□ 1.26
COL18A1P39060 AC084121.4-201ENST00000641598 221 ntBASIC22.93■■□□□ 1.26
COL18A1P39060 AF228730.8-201ENST00000642140 221 ntBASIC22.93■■□□□ 1.26
COL18A1P39060 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
COL18A1P39060 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL18A1P39060 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
COL18A1P39060 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
COL18A1P39060 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC22.93■■□□□ 1.26
COL18A1P39060 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
COL18A1P39060 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL18A1P39060 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
COL18A1P39060 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC22.92■■□□□ 1.26
COL18A1P39060 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
COL18A1P39060 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC22.92■■□□□ 1.26
COL18A1P39060 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC22.92■■□□□ 1.26
COL18A1P39060 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL18A1P39060 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL18A1P39060 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL18A1P39060 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC22.92■■□□□ 1.26
COL18A1P39060 AC092474.2-201ENST00000424288 719 ntBASIC22.92■■□□□ 1.26
COL18A1P39060 KLF2P3-201ENST00000451977 1087 ntBASIC22.92■■□□□ 1.26
COL18A1P39060 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL18A1P39060 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC22.92■■□□□ 1.26
COL18A1P39060 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC22.92■■□□□ 1.26
COL18A1P39060 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL18A1P39060 AF228730.6-201ENST00000641497 218 ntBASIC22.92■■□□□ 1.26
COL18A1P39060 AC084121.3-201ENST00000641716 218 ntBASIC22.92■■□□□ 1.26
COL18A1P39060 AC105233.6-201ENST00000642093 218 ntBASIC22.92■■□□□ 1.26
COL18A1P39060 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
COL18A1P39060 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC22.92■■□□□ 1.26
COL18A1P39060 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL18A1P39060 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
COL18A1P39060 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC22.92■■□□□ 1.26
COL18A1P39060 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC22.92■■□□□ 1.26
COL18A1P39060 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC22.92■■□□□ 1.26
COL18A1P39060 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
COL18A1P39060 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
COL18A1P39060 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC22.91■■□□□ 1.26
COL18A1P39060 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
COL18A1P39060 AC015922.1-201ENST00000421102 1152 ntBASIC22.91■■□□□ 1.26
COL18A1P39060 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC22.91■■□□□ 1.26
COL18A1P39060 FAM86C2P-203ENST00000528684 1004 ntBASIC22.91■■□□□ 1.26
COL18A1P39060 MNT-208ENST00000575394 606 ntTSL 4 BASIC22.91■■□□□ 1.26
COL18A1P39060 AL009183.1-201ENST00000603760 355 ntBASIC22.91■■□□□ 1.26
COL18A1P39060 AL035252.4-201ENST00000624174 288 ntBASIC22.91■■□□□ 1.26
COL18A1P39060 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC22.91■■□□□ 1.26
COL18A1P39060 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
COL18A1P39060 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC22.91■■□□□ 1.26
COL18A1P39060 STK4-201ENST00000372801 2038 ntTSL 2 BASIC22.91■■□□□ 1.26
COL18A1P39060 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL18A1P39060 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC22.91■■□□□ 1.26
COL18A1P39060 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL18A1P39060 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC22.91■■□□□ 1.26
COL18A1P39060 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC22.91■■□□□ 1.26
COL18A1P39060 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC22.91■■□□□ 1.26
COL18A1P39060 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL18A1P39060 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL18A1P39060 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
COL18A1P39060 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC22.91■■□□□ 1.26
COL18A1P39060 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC22.91■■□□□ 1.26
COL18A1P39060 RPL30-202ENST00000396070 440 ntTSL 2 BASIC22.91■■□□□ 1.26
COL18A1P39060 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC22.91■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms