Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SCN4AP35499 MIR4515-201ENST00000584082 81 ntBASIC20.56■□□□□ 0.88
SCN4AP35499 AC004233.3-201ENST00000607794 1269 ntBASIC20.56■□□□□ 0.88
SCN4AP35499 AC017083.2-201ENST00000608069 979 ntBASIC20.56■□□□□ 0.88
SCN4AP35499 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC20.56■□□□□ 0.88
SCN4AP35499 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
SCN4AP35499 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.56■□□□□ 0.88
SCN4AP35499 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.56■□□□□ 0.88
SCN4AP35499 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN4AP35499 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCN4AP35499 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SCN4AP35499 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC20.55■□□□□ 0.88
SCN4AP35499 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.55■□□□□ 0.88
SCN4AP35499 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SCN4AP35499 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN4AP35499 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
SCN4AP35499 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC20.55■□□□□ 0.88
SCN4AP35499 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN4AP35499 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SCN4AP35499 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC20.55■□□□□ 0.88
SCN4AP35499 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN4AP35499 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC20.55■□□□□ 0.88
SCN4AP35499 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC20.55■□□□□ 0.88
SCN4AP35499 WASH6P-202ENST00000359512 1437 ntBASIC20.55■□□□□ 0.88
SCN4AP35499 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN4AP35499 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN4AP35499 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN4AP35499 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN4AP35499 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN4AP35499 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN4AP35499 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN4AP35499 MIR1909-201ENST00000411312 80 ntBASIC20.55■□□□□ 0.88
SCN4AP35499 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCN4AP35499 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC20.55■□□□□ 0.88
SCN4AP35499 ACA64.2-201ENST00000459014 129 ntBASIC20.55■□□□□ 0.88
SCN4AP35499 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SCN4AP35499 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC20.55■□□□□ 0.88
SCN4AP35499 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN4AP35499 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
SCN4AP35499 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
SCN4AP35499 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
SCN4AP35499 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.55■□□□□ 0.88
SCN4AP35499 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCN4AP35499 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SCN4AP35499 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN4AP35499 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN4AP35499 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN4AP35499 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SCN4AP35499 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN4AP35499 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC20.54■□□□□ 0.88
SCN4AP35499 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SCN4AP35499 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
SCN4AP35499 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC20.54■□□□□ 0.88
SCN4AP35499 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
SCN4AP35499 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN4AP35499 AC079776.1-201ENST00000401540 1152 ntBASIC20.54■□□□□ 0.88
SCN4AP35499 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN4AP35499 SPTLC1P1-201ENST00000447199 261 ntBASIC20.54■□□□□ 0.88
SCN4AP35499 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN4AP35499 GIMAP3P-201ENST00000495150 836 ntBASIC20.54■□□□□ 0.88
SCN4AP35499 LY6E-204ENST00000519546 971 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN4AP35499 IGHV3-62-201ENST00000520057 340 ntBASIC20.54■□□□□ 0.88
SCN4AP35499 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
SCN4AP35499 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC20.54■□□□□ 0.88
SCN4AP35499 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN4AP35499 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCN4AP35499 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.54■□□□□ 0.88
SCN4AP35499 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SCN4AP35499 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SCN4AP35499 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN4AP35499 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN4AP35499 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
SCN4AP35499 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC20.53■□□□□ 0.88
SCN4AP35499 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC20.53■□□□□ 0.88
SCN4AP35499 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN4AP35499 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC20.53■□□□□ 0.88
SCN4AP35499 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
SCN4AP35499 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC20.53■□□□□ 0.88
SCN4AP35499 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN4AP35499 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC20.53■□□□□ 0.88
SCN4AP35499 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN4AP35499 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SCN4AP35499 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN4AP35499 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
SCN4AP35499 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SCN4AP35499 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC20.53■□□□□ 0.88
SCN4AP35499 AP000842.3-202ENST00000569238 1080 ntBASIC20.53■□□□□ 0.88
SCN4AP35499 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCN4AP35499 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC20.53■□□□□ 0.88
SCN4AP35499 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.52■□□□□ 0.88
SCN4AP35499 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC20.52■□□□□ 0.88
SCN4AP35499 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.52■□□□□ 0.88
SCN4AP35499 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SCN4AP35499 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SCN4AP35499 TMPRSS11CP-201ENST00000453277 683 ntBASIC20.52■□□□□ 0.88
SCN4AP35499 SATB1-217ENST00000493952 626 ntTSL 3 BASIC20.52■□□□□ 0.88
SCN4AP35499 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SCN4AP35499 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
SCN4AP35499 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SCN4AP35499 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms