Protein–RNA interactions for Protein: P26640

VARS, Valine--tRNA ligase, humanhuman

Known RBP Predictions only

Length 1,264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VARSP26640 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VARSP26640 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
VARSP26640 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.33■□□□□ 0.36
VARSP26640 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VARSP26640 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VARSP26640 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VARSP26640 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.33■□□□□ 0.36
VARSP26640 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VARSP26640 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.33■□□□□ 0.36
VARSP26640 PRELID1P1-202ENST00000567272 903 ntBASIC17.33■□□□□ 0.36
VARSP26640 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.33■□□□□ 0.36
VARSP26640 AC111152.3-201ENST00000569699 673 ntBASIC17.33■□□□□ 0.36
VARSP26640 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.33■□□□□ 0.36
VARSP26640 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
VARSP26640 GPR32P1-201ENST00000601788 811 ntBASIC17.33■□□□□ 0.36
VARSP26640 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.33■□□□□ 0.36
VARSP26640 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VARSP26640 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
VARSP26640 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VARSP26640 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VARSP26640 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VARSP26640 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VARSP26640 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
VARSP26640 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
VARSP26640 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
VARSP26640 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VARSP26640 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VARSP26640 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.33■□□□□ 0.36
VARSP26640 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.32■□□□□ 0.36
VARSP26640 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
VARSP26640 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 AC108860.2-201ENST00000562760 2183 ntBASIC17.32■□□□□ 0.36
VARSP26640 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.32■□□□□ 0.36
VARSP26640 AL353692.3-201ENST00000407031 1396 ntBASIC17.32■□□□□ 0.36
VARSP26640 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
VARSP26640 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 AC004870.1-201ENST00000315132 882 ntBASIC17.32■□□□□ 0.36
VARSP26640 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.32■□□□□ 0.36
VARSP26640 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.32■□□□□ 0.36
VARSP26640 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.32■□□□□ 0.36
VARSP26640 KRT18P65-201ENST00000439811 1286 ntBASIC17.32■□□□□ 0.36
VARSP26640 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
VARSP26640 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.32■□□□□ 0.36
VARSP26640 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.32■□□□□ 0.36
VARSP26640 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.32■□□□□ 0.36
VARSP26640 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.32■□□□□ 0.36
VARSP26640 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
VARSP26640 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.32■□□□□ 0.36
VARSP26640 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.32■□□□□ 0.36
VARSP26640 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VARSP26640 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
VARSP26640 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
VARSP26640 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.32■□□□□ 0.36
VARSP26640 Z83836.1-201ENST00000624605 1642 ntBASIC17.32■□□□□ 0.36
VARSP26640 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VARSP26640 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
VARSP26640 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VARSP26640 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VARSP26640 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VARSP26640 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.31■□□□□ 0.36
VARSP26640 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VARSP26640 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.31■□□□□ 0.36
VARSP26640 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.31■□□□□ 0.36
VARSP26640 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
VARSP26640 PP12613-201ENST00000424958 2230 ntBASIC17.31■□□□□ 0.36
VARSP26640 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
VARSP26640 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.31■□□□□ 0.36
VARSP26640 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.31■□□□□ 0.36
VARSP26640 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VARSP26640 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VARSP26640 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.31■□□□□ 0.36
VARSP26640 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VARSP26640 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VARSP26640 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VARSP26640 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VARSP26640 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VARSP26640 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VARSP26640 AL645929.1-201ENST00000420084 975 ntBASIC17.31■□□□□ 0.36
VARSP26640 TSPY12P-201ENST00000421279 868 ntBASIC17.31■□□□□ 0.36
VARSP26640 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.31■□□□□ 0.36
VARSP26640 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.31■□□□□ 0.36
VARSP26640 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.31■□□□□ 0.36
VARSP26640 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
VARSP26640 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.31■□□□□ 0.36
VARSP26640 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms