Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TPM1P09493 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TPM1P09493 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TPM1P09493 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TPM1P09493 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.41■□□□□ 0.7
TPM1P09493 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TPM1P09493 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TPM1P09493 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.41■□□□□ 0.7
TPM1P09493 AL158047.1-201ENST00000445918 881 ntBASIC19.41■□□□□ 0.7
TPM1P09493 RBM17P1-201ENST00000453646 1190 ntBASIC19.41■□□□□ 0.7
TPM1P09493 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.41■□□□□ 0.7
TPM1P09493 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.41■□□□□ 0.7
TPM1P09493 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.41■□□□□ 0.7
TPM1P09493 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
TPM1P09493 AC024243.1-201ENST00000609234 778 ntBASIC19.41■□□□□ 0.7
TPM1P09493 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.41■□□□□ 0.7
TPM1P09493 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TPM1P09493 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TPM1P09493 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.41■□□□□ 0.7
TPM1P09493 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TPM1P09493 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TPM1P09493 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.41■□□□□ 0.7
TPM1P09493 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TPM1P09493 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TPM1P09493 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.4■□□□□ 0.7
TPM1P09493 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC19.4■□□□□ 0.7
TPM1P09493 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TPM1P09493 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
TPM1P09493 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.4■□□□□ 0.7
TPM1P09493 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
TPM1P09493 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TPM1P09493 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC19.4■□□□□ 0.7
TPM1P09493 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
TPM1P09493 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TPM1P09493 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.4■□□□□ 0.7
TPM1P09493 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.4■□□□□ 0.7
TPM1P09493 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TPM1P09493 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TPM1P09493 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.4■□□□□ 0.7
TPM1P09493 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TPM1P09493 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
TPM1P09493 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TPM1P09493 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TPM1P09493 AL162727.3-201ENST00000635661 2787 ntBASIC19.39■□□□□ 0.7
TPM1P09493 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
TPM1P09493 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TPM1P09493 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TPM1P09493 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.39■□□□□ 0.69
TPM1P09493 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TPM1P09493 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TPM1P09493 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC19.39■□□□□ 0.69
TPM1P09493 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
TPM1P09493 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TPM1P09493 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.39■□□□□ 0.69
TPM1P09493 AL512604.3-201ENST00000569583 964 ntBASIC19.39■□□□□ 0.69
TPM1P09493 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TPM1P09493 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TPM1P09493 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
TPM1P09493 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
TPM1P09493 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TPM1P09493 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TPM1P09493 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TPM1P09493 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC19.39■□□□□ 0.69
TPM1P09493 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TPM1P09493 REXO1L11P-201ENST00000620964 1927 ntBASIC19.39■□□□□ 0.69
TPM1P09493 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TPM1P09493 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC19.39■□□□□ 0.69
TPM1P09493 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.39■□□□□ 0.69
TPM1P09493 FLJ16779-201ENST00000612722 7638 ntBASIC19.39■□□□□ 0.69
TPM1P09493 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TPM1P09493 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TPM1P09493 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TPM1P09493 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TPM1P09493 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TPM1P09493 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TPM1P09493 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TPM1P09493 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC19.38■□□□□ 0.69
TPM1P09493 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
TPM1P09493 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TPM1P09493 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.38■□□□□ 0.69
TPM1P09493 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TPM1P09493 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
TPM1P09493 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TPM1P09493 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.38■□□□□ 0.69
TPM1P09493 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.38■□□□□ 0.69
TPM1P09493 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
TPM1P09493 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.38■□□□□ 0.69
TPM1P09493 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TPM1P09493 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TPM1P09493 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.38■□□□□ 0.69
TPM1P09493 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TPM1P09493 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.38■□□□□ 0.69
TPM1P09493 FITM1-202ENST00000559294 800 ntBASIC19.38■□□□□ 0.69
TPM1P09493 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC19.38■□□□□ 0.69
TPM1P09493 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.38■□□□□ 0.69
TPM1P09493 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TPM1P09493 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TPM1P09493 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TPM1P09493 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
TPM1P09493 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms