Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
HLA-DOAP06340 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
HLA-DOAP06340 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-DOAP06340 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-DOAP06340 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.66■□□□□ 0.9
HLA-DOAP06340 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
HLA-DOAP06340 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-DOAP06340 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-DOAP06340 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
HLA-DOAP06340 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC20.66■□□□□ 0.9
HLA-DOAP06340 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC20.66■□□□□ 0.9
HLA-DOAP06340 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
HLA-DOAP06340 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.66■□□□□ 0.9
HLA-DOAP06340 CRYGEP-201ENST00000412192 528 ntBASIC20.66■□□□□ 0.9
HLA-DOAP06340 LINC00982-205ENST00000420957 435 ntBASIC20.66■□□□□ 0.9
HLA-DOAP06340 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-DOAP06340 AC002347.1-201ENST00000569543 541 ntBASIC20.66■□□□□ 0.9
HLA-DOAP06340 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC20.66■□□□□ 0.9
HLA-DOAP06340 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC20.66■□□□□ 0.9
HLA-DOAP06340 AL805961.1-202ENST00000641562 540 ntBASIC20.66■□□□□ 0.9
HLA-DOAP06340 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-DOAP06340 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-DOAP06340 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
HLA-DOAP06340 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-DOAP06340 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-DOAP06340 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
HLA-DOAP06340 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
HLA-DOAP06340 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.65■□□□□ 0.9
HLA-DOAP06340 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
HLA-DOAP06340 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC20.65■□□□□ 0.9
HLA-DOAP06340 GPR89P-201ENST00000407924 1495 ntBASIC20.65■□□□□ 0.9
HLA-DOAP06340 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
HLA-DOAP06340 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC20.65■□□□□ 0.9
HLA-DOAP06340 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.65■□□□□ 0.9
HLA-DOAP06340 DNAJB3-201ENST00000446806 729 ntBASIC20.65■□□□□ 0.9
HLA-DOAP06340 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.65■□□□□ 0.9
HLA-DOAP06340 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC20.65■□□□□ 0.9
HLA-DOAP06340 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC20.65■□□□□ 0.9
HLA-DOAP06340 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC20.65■□□□□ 0.9
HLA-DOAP06340 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC20.65■□□□□ 0.9
HLA-DOAP06340 AL353135.1-201ENST00000606729 504 ntBASIC20.65■□□□□ 0.9
HLA-DOAP06340 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC20.65■□□□□ 0.9
HLA-DOAP06340 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC20.65■□□□□ 0.9
HLA-DOAP06340 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.65■□□□□ 0.9
HLA-DOAP06340 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.65■□□□□ 0.9
HLA-DOAP06340 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DOAP06340 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
HLA-DOAP06340 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
HLA-DOAP06340 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
HLA-DOAP06340 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HLA-DOAP06340 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HLA-DOAP06340 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
HLA-DOAP06340 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-DOAP06340 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.64■□□□□ 0.89
HLA-DOAP06340 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC20.64■□□□□ 0.89
HLA-DOAP06340 YBX2P1-201ENST00000394192 760 ntBASIC20.64■□□□□ 0.89
HLA-DOAP06340 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-DOAP06340 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC20.64■□□□□ 0.89
HLA-DOAP06340 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC20.64■□□□□ 0.89
HLA-DOAP06340 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC20.64■□□□□ 0.89
HLA-DOAP06340 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.64■□□□□ 0.89
HLA-DOAP06340 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-DOAP06340 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-DOAP06340 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-DOAP06340 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-DOAP06340 BICD1-207ENST00000551848 1962 ntBASIC20.64■□□□□ 0.89
HLA-DOAP06340 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
HLA-DOAP06340 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC20.64■□□□□ 0.89
HLA-DOAP06340 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.64■□□□□ 0.89
HLA-DOAP06340 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-DOAP06340 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
HLA-DOAP06340 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-DOAP06340 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-DOAP06340 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.63■□□□□ 0.89
HLA-DOAP06340 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-DOAP06340 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-DOAP06340 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-DOAP06340 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-DOAP06340 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-DOAP06340 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20.63■□□□□ 0.89
HLA-DOAP06340 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
HLA-DOAP06340 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-DOAP06340 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms