Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHOX2O60902 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SHOX2O60902 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.62■□□□□ 0.41
SHOX2O60902 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.61■□□□□ 0.41
SHOX2O60902 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.61■□□□□ 0.41
SHOX2O60902 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHOX2O60902 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHOX2O60902 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
SHOX2O60902 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHOX2O60902 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC17.61■□□□□ 0.41
SHOX2O60902 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHOX2O60902 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SHOX2O60902 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHOX2O60902 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.61■□□□□ 0.41
SHOX2O60902 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHOX2O60902 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHOX2O60902 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
SHOX2O60902 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHOX2O60902 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHOX2O60902 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHOX2O60902 POM121L13P-201ENST00000422362 380 ntBASIC17.61■□□□□ 0.41
SHOX2O60902 TK2-208ENST00000545043 1120 ntTSL 2 BASIC17.61■□□□□ 0.41
SHOX2O60902 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.61■□□□□ 0.41
SHOX2O60902 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHOX2O60902 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.61■□□□□ 0.41
SHOX2O60902 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.61■□□□□ 0.41
SHOX2O60902 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SHOX2O60902 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
SHOX2O60902 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHOX2O60902 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SHOX2O60902 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.61■□□□□ 0.41
SHOX2O60902 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
SHOX2O60902 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHOX2O60902 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHOX2O60902 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.61■□□□□ 0.41
SHOX2O60902 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHOX2O60902 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SHOX2O60902 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SHOX2O60902 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SHOX2O60902 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SHOX2O60902 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.6■□□□□ 0.41
SHOX2O60902 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SHOX2O60902 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHOX2O60902 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHOX2O60902 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHOX2O60902 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SHOX2O60902 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.6■□□□□ 0.41
SHOX2O60902 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.6■□□□□ 0.41
SHOX2O60902 AC004980.1-204ENST00000429707 299 ntBASIC17.6■□□□□ 0.41
SHOX2O60902 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.6■□□□□ 0.41
SHOX2O60902 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.6■□□□□ 0.41
SHOX2O60902 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.6■□□□□ 0.41
SHOX2O60902 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SHOX2O60902 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SHOX2O60902 HOXB1-202ENST00000577092 1414 ntBASIC17.6■□□□□ 0.41
SHOX2O60902 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SHOX2O60902 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHOX2O60902 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHOX2O60902 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHOX2O60902 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SHOX2O60902 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHOX2O60902 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SHOX2O60902 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHOX2O60902 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SHOX2O60902 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SHOX2O60902 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.6■□□□□ 0.41
SHOX2O60902 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHOX2O60902 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHOX2O60902 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.59■□□□□ 0.41
SHOX2O60902 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHOX2O60902 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHOX2O60902 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.59■□□□□ 0.41
SHOX2O60902 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHOX2O60902 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHOX2O60902 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.59■□□□□ 0.41
SHOX2O60902 FAM45BP-202ENST00000592932 1624 ntBASIC17.59■□□□□ 0.41
SHOX2O60902 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHOX2O60902 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHOX2O60902 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHOX2O60902 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHOX2O60902 AC005104.2-201ENST00000427818 678 ntBASIC17.59■□□□□ 0.41
SHOX2O60902 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.59■□□□□ 0.41
SHOX2O60902 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.59■□□□□ 0.41
SHOX2O60902 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.59■□□□□ 0.41
SHOX2O60902 AL109923.1-201ENST00000618799 583 ntBASIC17.59■□□□□ 0.41
SHOX2O60902 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.59■□□□□ 0.41
SHOX2O60902 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.59■□□□□ 0.41
SHOX2O60902 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SHOX2O60902 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHOX2O60902 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SHOX2O60902 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.59■□□□□ 0.41
SHOX2O60902 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SHOX2O60902 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SHOX2O60902 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.58■□□□□ 0.41
SHOX2O60902 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.58■□□□□ 0.41
SHOX2O60902 AC093525.9-201ENST00000624961 1746 ntBASIC17.58■□□□□ 0.41
SHOX2O60902 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHOX2O60902 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.58■□□□□ 0.41
SHOX2O60902 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.58■□□□□ 0.41
SHOX2O60902 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms