Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 AC004817.3-201ENST00000602957 2129 ntBASIC18.37■□□□□ 0.53
USP3Q9Y6I4 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 BX005266.1-201ENST00000473402 457 ntBASIC18.37■□□□□ 0.53
USP3Q9Y6I4 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 STK19B-204ENST00000512515 211 ntBASIC18.37■□□□□ 0.53
USP3Q9Y6I4 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 MTDHP4-201ENST00000600287 670 ntBASIC18.37■□□□□ 0.53
USP3Q9Y6I4 AL773604.1-201ENST00000617417 272 ntBASIC18.37■□□□□ 0.53
USP3Q9Y6I4 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 AC133963.1-201ENST00000504166 1679 ntBASIC18.37■□□□□ 0.53
USP3Q9Y6I4 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
USP3Q9Y6I4 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
USP3Q9Y6I4 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 AL031284.1-201ENST00000419297 478 ntBASIC18.35■□□□□ 0.53
USP3Q9Y6I4 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 AL139327.4-201ENST00000612362 153 ntBASIC18.35■□□□□ 0.53
USP3Q9Y6I4 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 PP12613-201ENST00000424958 2230 ntBASIC18.35■□□□□ 0.53
USP3Q9Y6I4 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.35■□□□□ 0.53
USP3Q9Y6I4 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
USP3Q9Y6I4 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms