Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AL138781.2-201ENST00000617896 1843 ntBASIC33.25■■■□□ 2.91
SHROOM4Q9ULL8 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC33.25■■■□□ 2.91
SHROOM4Q9ULL8 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC33.25■■■□□ 2.91
SHROOM4Q9ULL8 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC33.25■■■□□ 2.91
SHROOM4Q9ULL8 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC33.25■■■□□ 2.91
SHROOM4Q9ULL8 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC33.25■■■□□ 2.91
SHROOM4Q9ULL8 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC33.24■■■□□ 2.91
SHROOM4Q9ULL8 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC33.24■■■□□ 2.91
SHROOM4Q9ULL8 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC33.24■■■□□ 2.91
SHROOM4Q9ULL8 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC33.24■■■□□ 2.91
SHROOM4Q9ULL8 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC33.24■■■□□ 2.91
SHROOM4Q9ULL8 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC33.24■■■□□ 2.91
SHROOM4Q9ULL8 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC33.24■■■□□ 2.91
SHROOM4Q9ULL8 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC33.24■■■□□ 2.91
SHROOM4Q9ULL8 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC33.24■■■□□ 2.91
SHROOM4Q9ULL8 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC33.24■■■□□ 2.91
SHROOM4Q9ULL8 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC33.24■■■□□ 2.91
SHROOM4Q9ULL8 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC33.24■■■□□ 2.91
SHROOM4Q9ULL8 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC33.23■■■□□ 2.91
SHROOM4Q9ULL8 AL020996.1-203ENST00000536896 2307 ntBASIC33.23■■■□□ 2.91
SHROOM4Q9ULL8 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC33.23■■■□□ 2.91
SHROOM4Q9ULL8 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC33.23■■■□□ 2.91
SHROOM4Q9ULL8 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC33.23■■■□□ 2.91
SHROOM4Q9ULL8 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC33.23■■■□□ 2.91
SHROOM4Q9ULL8 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC33.23■■■□□ 2.91
SHROOM4Q9ULL8 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
SHROOM4Q9ULL8 AL353593.2-201ENST00000602529 1483 ntBASIC33.23■■■□□ 2.91
SHROOM4Q9ULL8 AC004461.1-201ENST00000412461 403 ntBASIC33.23■■■□□ 2.91
SHROOM4Q9ULL8 AC109322.1-201ENST00000524499 1264 ntBASIC33.23■■■□□ 2.91
SHROOM4Q9ULL8 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC33.23■■■□□ 2.91
SHROOM4Q9ULL8 AC022145.2-201ENST00000598203 171 ntBASIC33.23■■■□□ 2.91
SHROOM4Q9ULL8 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC33.23■■■□□ 2.91
SHROOM4Q9ULL8 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC33.23■■■□□ 2.91
SHROOM4Q9ULL8 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC33.23■■■□□ 2.91
SHROOM4Q9ULL8 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
SHROOM4Q9ULL8 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 MADD-208ENST00000405573 1823 ntTSL 5 BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 AC015922.1-201ENST00000421102 1152 ntBASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 POLD4-207ENST00000531239 584 ntTSL 2 BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 AC096734.2-201ENST00000562054 433 ntBASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC33.22■■■□□ 2.91
SHROOM4Q9ULL8 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
SHROOM4Q9ULL8 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
SHROOM4Q9ULL8 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
SHROOM4Q9ULL8 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
SHROOM4Q9ULL8 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
SHROOM4Q9ULL8 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC33.21■■■□□ 2.91
SHROOM4Q9ULL8 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC33.21■■■□□ 2.91
SHROOM4Q9ULL8 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
SHROOM4Q9ULL8 AC092902.6-201ENST00000641783 218 ntBASIC33.21■■■□□ 2.91
SHROOM4Q9ULL8 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC33.21■■■□□ 2.91
SHROOM4Q9ULL8 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC33.21■■■□□ 2.91
SHROOM4Q9ULL8 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
SHROOM4Q9ULL8 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC33.21■■■□□ 2.91
SHROOM4Q9ULL8 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC33.21■■■□□ 2.91
SHROOM4Q9ULL8 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC33.21■■■□□ 2.91
SHROOM4Q9ULL8 AC063926.2-201ENST00000623766 1308 ntBASIC33.21■■■□□ 2.91
SHROOM4Q9ULL8 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC33.2■■■□□ 2.91
SHROOM4Q9ULL8 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC33.2■■■□□ 2.91
SHROOM4Q9ULL8 BAD-202ENST00000394531 631 ntTSL 3 BASIC33.2■■■□□ 2.91
SHROOM4Q9ULL8 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC33.2■■■□□ 2.91
SHROOM4Q9ULL8 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC33.2■■■□□ 2.91
SHROOM4Q9ULL8 NKTR-203ENST00000442970 646 ntTSL 2 BASIC33.2■■■□□ 2.91
SHROOM4Q9ULL8 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC33.2■■■□□ 2.91
SHROOM4Q9ULL8 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC33.2■■■□□ 2.91
SHROOM4Q9ULL8 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC33.2■■■□□ 2.91
SHROOM4Q9ULL8 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.91
SHROOM4Q9ULL8 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.91
SHROOM4Q9ULL8 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC33.2■■■□□ 2.91
SHROOM4Q9ULL8 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC33.2■■■□□ 2.91
SHROOM4Q9ULL8 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC33.2■■■□□ 2.91
SHROOM4Q9ULL8 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC33.2■■■□□ 2.91
SHROOM4Q9ULL8 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC33.2■■■□□ 2.9
SHROOM4Q9ULL8 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC33.2■■■□□ 2.9
SHROOM4Q9ULL8 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.9
SHROOM4Q9ULL8 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
SHROOM4Q9ULL8 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC33.19■■■□□ 2.9
SHROOM4Q9ULL8 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC33.19■■■□□ 2.9
SHROOM4Q9ULL8 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
SHROOM4Q9ULL8 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC33.19■■■□□ 2.9
SHROOM4Q9ULL8 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC33.19■■■□□ 2.9
SHROOM4Q9ULL8 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms