Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 TERF1P1-201ENST00000311003 1181 ntBASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 AC113347.1-201ENST00000413321 391 ntBASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 AC117947.1-201ENST00000427448 529 ntBASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 AC093827.2-201ENST00000512654 315 ntBASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 HYMAI.1-201ENST00000620949 238 ntBASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.23■□□□□ 0.67
LIMA1Q9UHB6 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LIMA1Q9UHB6 AC105020.1-201ENST00000435356 2205 ntBASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 OS9-205ENST00000413095 1660 ntTSL 2 BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 RNF126P1-202ENST00000569893 925 ntBASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 AC019129.2-201ENST00000609837 1235 ntBASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 AC093525.9-201ENST00000624961 1746 ntBASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 AC097493.4-201ENST00000641197 219 ntBASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LIMA1Q9UHB6 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
LIMA1Q9UHB6 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC19.21■□□□□ 0.66
LIMA1Q9UHB6 TNRC18P3-201ENST00000441896 2691 ntBASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
LIMA1Q9UHB6 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms