Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 AC012313.1-201ENST00000593393 3059 ntBASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 EMBP1-201ENST00000458200 901 ntBASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 ABCD1P5-201ENST00000445663 754 ntBASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 FAAHP1-202ENST00000446499 1238 ntBASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 SAPCD2P3-201ENST00000455031 850 ntBASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TRIM39Q9HCM9 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 AKR1C7P-201ENST00000305623 895 ntBASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 PCDHB18P-201ENST00000524813 2368 ntBASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM39Q9HCM9 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms