Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
RNF41Q9H4P4 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
RNF41Q9H4P4 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 SPDYE21P-201ENST00000413323 827 ntBASIC20.75■□□□□ 0.91
RNF41Q9H4P4 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 FGFR3P6-201ENST00000457012 610 ntBASIC20.75■□□□□ 0.91
RNF41Q9H4P4 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 AL121912.1-201ENST00000603683 238 ntBASIC20.75■□□□□ 0.91
RNF41Q9H4P4 AL139288.1-201ENST00000623748 933 ntBASIC20.75■□□□□ 0.91
RNF41Q9H4P4 AC073592.4-201ENST00000623827 446 ntBASIC20.75■□□□□ 0.91
RNF41Q9H4P4 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 SIGLEC16-201ENST00000599858 1437 ntBASIC20.75■□□□□ 0.91
RNF41Q9H4P4 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 AL133373.2-201ENST00000623187 2828 ntBASIC20.75■□□□□ 0.91
RNF41Q9H4P4 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RNF41Q9H4P4 AC079776.2-201ENST00000641154 1609 ntBASIC20.75■□□□□ 0.91
RNF41Q9H4P4 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 SCARNA2-201ENST00000458748 420 ntBASIC20.74■□□□□ 0.91
RNF41Q9H4P4 STK19B-204ENST00000512515 211 ntBASIC20.74■□□□□ 0.91
RNF41Q9H4P4 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 AL139327.4-201ENST00000612362 153 ntBASIC20.74■□□□□ 0.91
RNF41Q9H4P4 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 AL356309.3-201ENST00000624132 1934 ntBASIC20.74■□□□□ 0.91
RNF41Q9H4P4 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RNF41Q9H4P4 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 AL020989.1-201ENST00000422979 469 ntBASIC20.73■□□□□ 0.91
RNF41Q9H4P4 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.73■□□□□ 0.91
RNF41Q9H4P4 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
RNF41Q9H4P4 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RNF41Q9H4P4 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
RNF41Q9H4P4 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF41Q9H4P4 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
RNF41Q9H4P4 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.72■□□□□ 0.91
RNF41Q9H4P4 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.72■□□□□ 0.91
RNF41Q9H4P4 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.72■□□□□ 0.91
RNF41Q9H4P4 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RNF41Q9H4P4 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.72■□□□□ 0.91
RNF41Q9H4P4 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.72■□□□□ 0.91
RNF41Q9H4P4 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF41Q9H4P4 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RNF41Q9H4P4 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms