Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 COX11P1-201ENST00000489116 835 ntBASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 MST1L-201ENST00000442552 2185 ntBASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC50Q8IVM0 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 KRT18P65-201ENST00000439811 1286 ntBASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 AL441883.1-201ENST00000566170 1045 ntBASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 AC079602.3-201ENST00000623931 403 ntBASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 AL031432.5-201ENST00000641059 760 ntBASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 LINC00304-203ENST00000565008 1864 ntBASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC50Q8IVM0 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 AL138688.1-201ENST00000624851 1594 ntBASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 KRT89P-201ENST00000620027 1478 ntBASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 AC133561.5-201ENST00000635547 218 ntBASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC50Q8IVM0 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC50Q8IVM0 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CCDC50Q8IVM0 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC50Q8IVM0 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC50Q8IVM0 HLA-J-201ENST00000462773 1622 ntBASIC18.6■□□□□ 0.57
CCDC50Q8IVM0 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC50Q8IVM0 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC18.6■□□□□ 0.57
CCDC50Q8IVM0 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CCDC50Q8IVM0 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC50Q8IVM0 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CCDC50Q8IVM0 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CCDC50Q8IVM0 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC50Q8IVM0 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC50Q8IVM0 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC50Q8IVM0 KRT18P48-201ENST00000434763 852 ntBASIC18.6■□□□□ 0.57
CCDC50Q8IVM0 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC50Q8IVM0 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms