Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 HLA-DQB2-231ENST00000435145 2026 ntBASIC10.96□□□□□ -0.65
LINC00643Q86TS7 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 AC007292.2-201ENST00000593524 1812 ntBASIC10.96□□□□□ -0.65
LINC00643Q86TS7 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 SNCG-201ENST00000348795 684 ntTSL 2 BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 AC016575.1-201ENST00000607026 382 ntBASIC10.96□□□□□ -0.65
LINC00643Q86TS7 SRP68-213ENST00000629930 165 ntTSL 5 BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 AC023908.3-201ENST00000564211 3047 ntBASIC10.96□□□□□ -0.66
LINC00643Q86TS7 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 AC005252.3-201ENST00000623855 2258 ntBASIC10.96□□□□□ -0.66
LINC00643Q86TS7 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.66
LINC00643Q86TS7 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 HLA-J-201ENST00000462773 1622 ntBASIC10.95□□□□□ -0.66
LINC00643Q86TS7 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 ADM-208ENST00000534464 1640 ntTSL 2 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 AC139749.1-202ENST00000617529 3139 ntBASIC10.95□□□□□ -0.66
LINC00643Q86TS7 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC10.95□□□□□ -0.66
LINC00643Q86TS7 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC10.95□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms