Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 TSPY19P-201ENST00000418461 509 ntBASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 AC007967.3-201ENST00000434308 558 ntBASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 TSPY18P-201ENST00000441642 509 ntBASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 AC096582.2-201ENST00000510860 516 ntBASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NUP54Q7Z3B4 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 BX276092.7-203ENST00000637198 1536 ntBASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 AC122714.2-201ENST00000502787 707 ntBASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 AC091304.2-201ENST00000564639 760 ntBASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 MIR5100-201ENST00000579544 119 ntBASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 AC138894.3-201ENST00000603787 634 ntBASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 AC114341.1-201ENST00000618070 349 ntBASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.31■□□□□ 0.2
NUP54Q7Z3B4 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 RCN1P2-201ENST00000398357 915 ntBASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 LINC01711-201ENST00000598340 967 ntBASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NUP54Q7Z3B4 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms