Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 IGHV3-52-201ENST00000519770 353 ntBASIC19.02■□□□□ 0.64
KRT39Q6A163 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
KRT39Q6A163 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC19.02■□□□□ 0.64
KRT39Q6A163 AC109462.3-201ENST00000573934 613 ntBASIC19.02■□□□□ 0.64
KRT39Q6A163 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.02■□□□□ 0.64
KRT39Q6A163 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
KRT39Q6A163 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.02■□□□□ 0.64
KRT39Q6A163 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
KRT39Q6A163 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
KRT39Q6A163 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
KRT39Q6A163 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
KRT39Q6A163 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.02■□□□□ 0.63
KRT39Q6A163 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
KRT39Q6A163 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC19.02■□□□□ 0.63
KRT39Q6A163 INTS4P1-201ENST00000438455 1935 ntBASIC19.02■□□□□ 0.63
KRT39Q6A163 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.02■□□□□ 0.63
KRT39Q6A163 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
KRT39Q6A163 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.01■□□□□ 0.63
KRT39Q6A163 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
KRT39Q6A163 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.01■□□□□ 0.63
KRT39Q6A163 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.01■□□□□ 0.63
KRT39Q6A163 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
KRT39Q6A163 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.01■□□□□ 0.63
KRT39Q6A163 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
KRT39Q6A163 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC19.01■□□□□ 0.63
KRT39Q6A163 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC19.01■□□□□ 0.63
KRT39Q6A163 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
KRT39Q6A163 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC19.01■□□□□ 0.63
KRT39Q6A163 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
KRT39Q6A163 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.01■□□□□ 0.63
KRT39Q6A163 RCN1P2-201ENST00000398357 915 ntBASIC19.01■□□□□ 0.63
KRT39Q6A163 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.01■□□□□ 0.63
KRT39Q6A163 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
KRT39Q6A163 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.01■□□□□ 0.63
KRT39Q6A163 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.01■□□□□ 0.63
KRT39Q6A163 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
KRT39Q6A163 AL139327.4-201ENST00000612362 153 ntBASIC19.01■□□□□ 0.63
KRT39Q6A163 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
KRT39Q6A163 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
KRT39Q6A163 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
KRT39Q6A163 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
KRT39Q6A163 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.01■□□□□ 0.63
KRT39Q6A163 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
KRT39Q6A163 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
KRT39Q6A163 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
KRT39Q6A163 AC141586.5-201ENST00000624546 2050 ntBASIC19.01■□□□□ 0.63
KRT39Q6A163 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
KRT39Q6A163 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19■□□□□ 0.63
KRT39Q6A163 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19■□□□□ 0.63
KRT39Q6A163 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19■□□□□ 0.63
KRT39Q6A163 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19■□□□□ 0.63
KRT39Q6A163 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
KRT39Q6A163 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19■□□□□ 0.63
KRT39Q6A163 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19■□□□□ 0.63
KRT39Q6A163 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
KRT39Q6A163 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19■□□□□ 0.63
KRT39Q6A163 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
KRT39Q6A163 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19■□□□□ 0.63
KRT39Q6A163 AC139713.2-201ENST00000641328 2723 ntBASIC19■□□□□ 0.63
KRT39Q6A163 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
KRT39Q6A163 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
KRT39Q6A163 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
KRT39Q6A163 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19■□□□□ 0.63
KRT39Q6A163 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19■□□□□ 0.63
KRT39Q6A163 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19■□□□□ 0.63
KRT39Q6A163 AC111152.3-201ENST00000569699 673 ntBASIC19■□□□□ 0.63
KRT39Q6A163 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19■□□□□ 0.63
KRT39Q6A163 AC099336.1-202ENST00000602961 463 ntBASIC19■□□□□ 0.63
KRT39Q6A163 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19■□□□□ 0.63
KRT39Q6A163 AC114341.1-201ENST00000618070 349 ntBASIC19■□□□□ 0.63
KRT39Q6A163 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
KRT39Q6A163 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19■□□□□ 0.63
KRT39Q6A163 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19■□□□□ 0.63
KRT39Q6A163 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19■□□□□ 0.63
KRT39Q6A163 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
KRT39Q6A163 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
KRT39Q6A163 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC19■□□□□ 0.63
KRT39Q6A163 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19■□□□□ 0.63
KRT39Q6A163 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
KRT39Q6A163 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
KRT39Q6A163 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
KRT39Q6A163 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19■□□□□ 0.63
KRT39Q6A163 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19■□□□□ 0.63
KRT39Q6A163 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
KRT39Q6A163 FZD10-202ENST00000539839 3282 ntBASIC18.99■□□□□ 0.63
KRT39Q6A163 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
KRT39Q6A163 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
KRT39Q6A163 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.99■□□□□ 0.63
KRT39Q6A163 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
KRT39Q6A163 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
KRT39Q6A163 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
KRT39Q6A163 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
KRT39Q6A163 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.99■□□□□ 0.63
KRT39Q6A163 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
KRT39Q6A163 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
KRT39Q6A163 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
KRT39Q6A163 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
KRT39Q6A163 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
KRT39Q6A163 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.99■□□□□ 0.63
KRT39Q6A163 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms