Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS53Q5VIR6 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
VPS53Q5VIR6 AC138894.3-201ENST00000603787 634 ntBASIC21.27■■□□□ 1
VPS53Q5VIR6 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC21.27■■□□□ 1
VPS53Q5VIR6 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
VPS53Q5VIR6 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS53Q5VIR6 REXO1L11P-201ENST00000620964 1927 ntBASIC21.27■■□□□ 1
VPS53Q5VIR6 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC21.27■■□□□ 1
VPS53Q5VIR6 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
VPS53Q5VIR6 TP73-AS1-210ENST00000637775 1455 ntBASIC21.26■□□□□ 0.99
VPS53Q5VIR6 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 AC020916.1-201ENST00000587762 1774 ntBASIC21.26■□□□□ 0.99
VPS53Q5VIR6 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VPS53Q5VIR6 AC097374.2-201ENST00000618617 1306 ntBASIC21.26■□□□□ 0.99
VPS53Q5VIR6 AL355312.1-201ENST00000407115 2176 ntBASIC21.26■□□□□ 0.99
VPS53Q5VIR6 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 EML3-212ENST00000494176 2901 ntTSL 2 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 EML3-216ENST00000529309 2909 ntTSL 2 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 RCN1P2-201ENST00000398357 915 ntBASIC21.25■□□□□ 0.99
VPS53Q5VIR6 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 DUSP5P1-201ENST00000441325 1139 ntBASIC21.25■□□□□ 0.99
VPS53Q5VIR6 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 AC096582.2-201ENST00000510860 516 ntBASIC21.25■□□□□ 0.99
VPS53Q5VIR6 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 CCNC-219ENST00000627680 896 ntTSL 5 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC21.25■□□□□ 0.99
VPS53Q5VIR6 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 TBC1D3P5-201ENST00000579401 1545 ntBASIC21.24■□□□□ 0.99
VPS53Q5VIR6 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 PP12613-201ENST00000424958 2230 ntBASIC21.24■□□□□ 0.99
VPS53Q5VIR6 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 CCS-201ENST00000310190 942 ntTSL 5 BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS53Q5VIR6 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms