Protein–RNA interactions for Protein: Q496Y0

LONRF3, LON peptidase N-terminal domain and RING finger protein 3, humanhuman

Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LONRF3Q496Y0 LINC01451-201ENST00000623792 534 ntBASIC20.04■□□□□ 0.8
LONRF3Q496Y0 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LONRF3Q496Y0 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.04■□□□□ 0.8
LONRF3Q496Y0 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LONRF3Q496Y0 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LONRF3Q496Y0 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.04■□□□□ 0.8
LONRF3Q496Y0 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.04■□□□□ 0.8
LONRF3Q496Y0 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.04■□□□□ 0.8
LONRF3Q496Y0 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.04■□□□□ 0.8
LONRF3Q496Y0 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LONRF3Q496Y0 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LONRF3Q496Y0 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC20.04■□□□□ 0.8
LONRF3Q496Y0 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.04■□□□□ 0.8
LONRF3Q496Y0 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LONRF3Q496Y0 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
LONRF3Q496Y0 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LONRF3Q496Y0 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
LONRF3Q496Y0 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.04■□□□□ 0.8
LONRF3Q496Y0 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 DDX43P3-201ENST00000441064 443 ntBASIC20.03■□□□□ 0.8
LONRF3Q496Y0 UNC93B7-201ENST00000509439 705 ntBASIC20.03■□□□□ 0.8
LONRF3Q496Y0 AC112698.1-201ENST00000510299 916 ntBASIC20.03■□□□□ 0.8
LONRF3Q496Y0 PNN-202ENST00000553331 656 ntTSL 3 BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LONRF3Q496Y0 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 IGHGP-201ENST00000390555 1178 ntBASIC20.02■□□□□ 0.8
LONRF3Q496Y0 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 TSPY12P-201ENST00000421279 868 ntBASIC20.02■□□□□ 0.8
LONRF3Q496Y0 TOB2P1-201ENST00000469761 992 ntBASIC20.02■□□□□ 0.8
LONRF3Q496Y0 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 PPOX-214ENST00000535223 664 ntTSL 3 BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 TPSP2-201ENST00000561760 610 ntBASIC20.02■□□□□ 0.8
LONRF3Q496Y0 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.02■□□□□ 0.8
LONRF3Q496Y0 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LONRF3Q496Y0 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
LONRF3Q496Y0 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
LONRF3Q496Y0 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
LONRF3Q496Y0 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
LONRF3Q496Y0 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
LONRF3Q496Y0 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.02■□□□□ 0.79
LONRF3Q496Y0 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
LONRF3Q496Y0 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.02■□□□□ 0.79
LONRF3Q496Y0 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 AL845331.1-201ENST00000424978 1190 ntBASIC20.01■□□□□ 0.79
LONRF3Q496Y0 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.01■□□□□ 0.79
LONRF3Q496Y0 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms