Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP41Q3LFD5 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP41Q3LFD5 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USP41Q3LFD5 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP41Q3LFD5 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP41Q3LFD5 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.68■□□□□ 0.58
USP41Q3LFD5 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.68■□□□□ 0.58
USP41Q3LFD5 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP41Q3LFD5 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.68■□□□□ 0.58
USP41Q3LFD5 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USP41Q3LFD5 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
USP41Q3LFD5 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
USP41Q3LFD5 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
USP41Q3LFD5 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP41Q3LFD5 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
USP41Q3LFD5 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP41Q3LFD5 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.68■□□□□ 0.58
USP41Q3LFD5 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.68■□□□□ 0.58
USP41Q3LFD5 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.68■□□□□ 0.58
USP41Q3LFD5 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.68■□□□□ 0.58
USP41Q3LFD5 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
USP41Q3LFD5 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP41Q3LFD5 REXO1L9P-201ENST00000604264 2108 ntBASIC18.68■□□□□ 0.58
USP41Q3LFD5 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP41Q3LFD5 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.68■□□□□ 0.58
USP41Q3LFD5 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP41Q3LFD5 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP41Q3LFD5 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP41Q3LFD5 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
USP41Q3LFD5 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
USP41Q3LFD5 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 AC023274.1-201ENST00000418278 595 ntBASIC18.67■□□□□ 0.58
USP41Q3LFD5 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 AC112482.1-201ENST00000492080 688 ntBASIC18.67■□□□□ 0.58
USP41Q3LFD5 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 AC138932.1-201ENST00000534164 6830 ntBASIC18.67■□□□□ 0.58
USP41Q3LFD5 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
USP41Q3LFD5 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
USP41Q3LFD5 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP41Q3LFD5 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP41Q3LFD5 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.66■□□□□ 0.58
USP41Q3LFD5 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP41Q3LFD5 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
USP41Q3LFD5 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.66■□□□□ 0.58
USP41Q3LFD5 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP41Q3LFD5 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.66■□□□□ 0.58
USP41Q3LFD5 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP41Q3LFD5 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP41Q3LFD5 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
USP41Q3LFD5 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
USP41Q3LFD5 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP41Q3LFD5 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.66■□□□□ 0.58
USP41Q3LFD5 CRYGEP-201ENST00000412192 528 ntBASIC18.66■□□□□ 0.58
USP41Q3LFD5 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
USP41Q3LFD5 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.66■□□□□ 0.58
USP41Q3LFD5 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC18.66■□□□□ 0.58
USP41Q3LFD5 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms