Protein–RNA interactions for Protein: P61009

SPCS3, Signal peptidase complex subunit 3, humanhuman

Predictions only

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3P61009 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SPCS3P61009 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPCS3P61009 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPCS3P61009 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SPCS3P61009 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC14.38□□□□□ -0.11
SPCS3P61009 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
SPCS3P61009 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SPCS3P61009 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPCS3P61009 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
SPCS3P61009 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
SPCS3P61009 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SPCS3P61009 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPCS3P61009 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPCS3P61009 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
SPCS3P61009 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
SPCS3P61009 PCDH8P1-201ENST00000428983 2773 ntBASIC14.38□□□□□ -0.11
SPCS3P61009 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPCS3P61009 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
SPCS3P61009 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SPCS3P61009 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC14.38□□□□□ -0.11
SPCS3P61009 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC14.38□□□□□ -0.11
SPCS3P61009 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SPCS3P61009 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
SPCS3P61009 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SPCS3P61009 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.37□□□□□ -0.11
SPCS3P61009 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC14.37□□□□□ -0.11
SPCS3P61009 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 PRR31-201ENST00000371629 978 ntTSL 2 BASIC14.37□□□□□ -0.11
SPCS3P61009 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 AC007663.1-201ENST00000438948 1240 ntBASIC14.37□□□□□ -0.11
SPCS3P61009 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC14.37□□□□□ -0.11
SPCS3P61009 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
SPCS3P61009 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC14.37□□□□□ -0.11
SPCS3P61009 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SPCS3P61009 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
SPCS3P61009 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
SPCS3P61009 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SPCS3P61009 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
SPCS3P61009 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC14.37□□□□□ -0.11
SPCS3P61009 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC14.37□□□□□ -0.11
SPCS3P61009 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SPCS3P61009 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
SPCS3P61009 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SPCS3P61009 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPCS3P61009 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPCS3P61009 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
SPCS3P61009 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC14.36□□□□□ -0.11
SPCS3P61009 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC14.36□□□□□ -0.11
SPCS3P61009 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC14.36□□□□□ -0.11
SPCS3P61009 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC14.36□□□□□ -0.11
SPCS3P61009 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC14.36□□□□□ -0.11
SPCS3P61009 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
SPCS3P61009 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPCS3P61009 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPCS3P61009 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC14.36□□□□□ -0.11
SPCS3P61009 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPCS3P61009 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14.36□□□□□ -0.11
SPCS3P61009 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPCS3P61009 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPCS3P61009 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
SPCS3P61009 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
SPCS3P61009 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SPCS3P61009 RBM17P1-201ENST00000453646 1190 ntBASIC14.36□□□□□ -0.11
SPCS3P61009 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC14.36□□□□□ -0.11
SPCS3P61009 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SPCS3P61009 REXO2-216ENST00000544196 452 ntTSL 3 BASIC14.36□□□□□ -0.11
SPCS3P61009 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC14.36□□□□□ -0.11
SPCS3P61009 C2orf69P3-201ENST00000565542 1120 ntBASIC14.36□□□□□ -0.11
SPCS3P61009 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC14.36□□□□□ -0.11
SPCS3P61009 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SPCS3P61009 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC14.36□□□□□ -0.11
SPCS3P61009 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPCS3P61009 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SPCS3P61009 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
SPCS3P61009 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms