Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA1P55317 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA1P55317 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.06■□□□□ 0.32
FOXA1P55317 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA1P55317 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA1P55317 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.05■□□□□ 0.32
FOXA1P55317 AC016396.2-201ENST00000562575 1417 ntBASIC17.05■□□□□ 0.32
FOXA1P55317 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA1P55317 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
FOXA1P55317 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.05■□□□□ 0.32
FOXA1P55317 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA1P55317 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.05■□□□□ 0.32
FOXA1P55317 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
FOXA1P55317 AC116353.5-201ENST00000638148 1699 ntBASIC17.05■□□□□ 0.32
FOXA1P55317 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA1P55317 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.05■□□□□ 0.32
FOXA1P55317 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA1P55317 AC096633.1-201ENST00000422446 749 ntBASIC17.05■□□□□ 0.32
FOXA1P55317 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA1P55317 SPDYE13P-201ENST00000445314 798 ntBASIC17.05■□□□□ 0.32
FOXA1P55317 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.05■□□□□ 0.32
FOXA1P55317 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.05■□□□□ 0.32
FOXA1P55317 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA1P55317 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA1P55317 AL390719.2-201ENST00000606993 987 ntBASIC17.05■□□□□ 0.32
FOXA1P55317 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
FOXA1P55317 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.05■□□□□ 0.32
FOXA1P55317 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.05■□□□□ 0.32
FOXA1P55317 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA1P55317 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA1P55317 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA1P55317 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA1P55317 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA1P55317 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
FOXA1P55317 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.05■□□□□ 0.32
FOXA1P55317 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.05■□□□□ 0.32
FOXA1P55317 AGGF1P2-201ENST00000426656 2106 ntBASIC17.05■□□□□ 0.32
FOXA1P55317 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA1P55317 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
FOXA1P55317 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA1P55317 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.04■□□□□ 0.32
FOXA1P55317 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA1P55317 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
FOXA1P55317 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
FOXA1P55317 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
FOXA1P55317 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.04■□□□□ 0.32
FOXA1P55317 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
FOXA1P55317 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA1P55317 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA1P55317 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA1P55317 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA1P55317 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.04■□□□□ 0.32
FOXA1P55317 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.04■□□□□ 0.32
FOXA1P55317 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA1P55317 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA1P55317 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA1P55317 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
FOXA1P55317 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA1P55317 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA1P55317 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.04■□□□□ 0.32
FOXA1P55317 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA1P55317 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA1P55317 RNF152P1-201ENST00000397754 604 ntBASIC17.04■□□□□ 0.32
FOXA1P55317 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.04■□□□□ 0.32
FOXA1P55317 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.04■□□□□ 0.32
FOXA1P55317 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.04■□□□□ 0.32
FOXA1P55317 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.04■□□□□ 0.32
FOXA1P55317 AL139327.4-201ENST00000612362 153 ntBASIC17.04■□□□□ 0.32
FOXA1P55317 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.04■□□□□ 0.32
FOXA1P55317 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
FOXA1P55317 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
FOXA1P55317 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA1P55317 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA1P55317 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.04■□□□□ 0.32
FOXA1P55317 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
FOXA1P55317 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA1P55317 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA1P55317 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.03■□□□□ 0.32
FOXA1P55317 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA1P55317 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
FOXA1P55317 Z83836.1-201ENST00000624605 1642 ntBASIC17.03■□□□□ 0.32
FOXA1P55317 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA1P55317 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA1P55317 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA1P55317 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA1P55317 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA1P55317 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
FOXA1P55317 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA1P55317 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA1P55317 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.03■□□□□ 0.32
FOXA1P55317 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.03■□□□□ 0.32
FOXA1P55317 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.03■□□□□ 0.32
FOXA1P55317 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.03■□□□□ 0.32
FOXA1P55317 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.03■□□□□ 0.32
FOXA1P55317 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.03■□□□□ 0.32
FOXA1P55317 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA1P55317 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA1P55317 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
FOXA1P55317 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
FOXA1P55317 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms