Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH12P55289 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH12P55289 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
CDH12P55289 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH12P55289 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH12P55289 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH12P55289 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH12P55289 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH12P55289 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CDH12P55289 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDH12P55289 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDH12P55289 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH12P55289 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH12P55289 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CDH12P55289 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH12P55289 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CDH12P55289 LIN28AP1-201ENST00000429574 405 ntBASIC16.43■□□□□ 0.22
CDH12P55289 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH12P55289 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.43■□□□□ 0.22
CDH12P55289 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH12P55289 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH12P55289 AC140113.3-201ENST00000605663 199 ntBASIC16.43■□□□□ 0.22
CDH12P55289 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH12P55289 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CDH12P55289 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CDH12P55289 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
CDH12P55289 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH12P55289 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CDH12P55289 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH12P55289 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH12P55289 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CDH12P55289 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH12P55289 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.43■□□□□ 0.22
CDH12P55289 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH12P55289 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CDH12P55289 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CDH12P55289 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH12P55289 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH12P55289 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CDH12P55289 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CDH12P55289 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH12P55289 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CDH12P55289 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CDH12P55289 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH12P55289 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.42■□□□□ 0.22
CDH12P55289 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.42■□□□□ 0.22
CDH12P55289 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH12P55289 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH12P55289 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH12P55289 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH12P55289 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH12P55289 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CDH12P55289 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CDH12P55289 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.42■□□□□ 0.22
CDH12P55289 RPS20-210ENST00000523936 899 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH12P55289 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CDH12P55289 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.42■□□□□ 0.22
CDH12P55289 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.42■□□□□ 0.22
CDH12P55289 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC16.42■□□□□ 0.22
CDH12P55289 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.42■□□□□ 0.22
CDH12P55289 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CDH12P55289 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.42■□□□□ 0.22
CDH12P55289 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH12P55289 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH12P55289 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH12P55289 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.42■□□□□ 0.22
CDH12P55289 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH12P55289 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CDH12P55289 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.42■□□□□ 0.22
CDH12P55289 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CDH12P55289 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CDH12P55289 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
CDH12P55289 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CDH12P55289 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.41■□□□□ 0.22
CDH12P55289 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH12P55289 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH12P55289 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH12P55289 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH12P55289 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
CDH12P55289 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH12P55289 ATP5G1P1-201ENST00000448724 379 ntBASIC16.41■□□□□ 0.22
CDH12P55289 RASA4DP-201ENST00000460726 1199 ntBASIC16.41■□□□□ 0.22
CDH12P55289 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH12P55289 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.41■□□□□ 0.22
CDH12P55289 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.41■□□□□ 0.22
CDH12P55289 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
CDH12P55289 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH12P55289 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDH12P55289 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH12P55289 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH12P55289 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH12P55289 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH12P55289 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH12P55289 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH12P55289 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDH12P55289 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CDH12P55289 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
CDH12P55289 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.41■□□□□ 0.22
CDH12P55289 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.4■□□□□ 0.22
CDH12P55289 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms