Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGCS2P54868 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGCS2P54868 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
HMGCS2P54868 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGCS2P54868 CCND1-203ENST00000536559 553 ntTSL 3 BASIC20.22■□□□□ 0.83
HMGCS2P54868 CYB561-216ENST00000582297 897 ntTSL 3 BASIC20.22■□□□□ 0.83
HMGCS2P54868 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGCS2P54868 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGCS2P54868 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGCS2P54868 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGCS2P54868 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGCS2P54868 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGCS2P54868 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.22■□□□□ 0.83
HMGCS2P54868 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGCS2P54868 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGCS2P54868 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGCS2P54868 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
HMGCS2P54868 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGCS2P54868 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.21■□□□□ 0.83
HMGCS2P54868 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
HMGCS2P54868 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.21■□□□□ 0.83
HMGCS2P54868 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC20.21■□□□□ 0.83
HMGCS2P54868 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGCS2P54868 AC093503.3-201ENST00000624917 2352 ntBASIC20.21■□□□□ 0.83
HMGCS2P54868 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
HMGCS2P54868 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
HMGCS2P54868 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC20.21■□□□□ 0.83
HMGCS2P54868 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGCS2P54868 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGCS2P54868 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC20.21■□□□□ 0.83
HMGCS2P54868 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC20.21■□□□□ 0.83
HMGCS2P54868 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC20.21■□□□□ 0.83
HMGCS2P54868 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC20.21■□□□□ 0.83
HMGCS2P54868 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20.21■□□□□ 0.83
HMGCS2P54868 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC20.21■□□□□ 0.83
HMGCS2P54868 AC023141.13-201ENST00000604991 943 ntBASIC20.21■□□□□ 0.83
HMGCS2P54868 AC106028.4-201ENST00000614509 607 ntBASIC20.21■□□□□ 0.83
HMGCS2P54868 AC091812.2-201ENST00000619081 385 ntBASIC20.21■□□□□ 0.83
HMGCS2P54868 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.21■□□□□ 0.83
HMGCS2P54868 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGCS2P54868 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGCS2P54868 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGCS2P54868 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.21■□□□□ 0.83
HMGCS2P54868 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGCS2P54868 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGCS2P54868 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.21■□□□□ 0.83
HMGCS2P54868 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGCS2P54868 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HMGCS2P54868 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGCS2P54868 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGCS2P54868 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGCS2P54868 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC20.2■□□□□ 0.82
HMGCS2P54868 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGCS2P54868 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC20.2■□□□□ 0.82
HMGCS2P54868 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC20.2■□□□□ 0.82
HMGCS2P54868 AC007064.4-201ENST00000637740 555 ntBASIC20.2■□□□□ 0.82
HMGCS2P54868 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGCS2P54868 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGCS2P54868 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
HMGCS2P54868 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HMGCS2P54868 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGCS2P54868 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGCS2P54868 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGCS2P54868 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.19■□□□□ 0.82
HMGCS2P54868 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGCS2P54868 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGCS2P54868 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.19■□□□□ 0.82
HMGCS2P54868 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC20.19■□□□□ 0.82
HMGCS2P54868 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGCS2P54868 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGCS2P54868 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC20.19■□□□□ 0.82
HMGCS2P54868 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGCS2P54868 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGCS2P54868 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC20.19■□□□□ 0.82
HMGCS2P54868 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC20.19■□□□□ 0.82
HMGCS2P54868 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC20.19■□□□□ 0.82
HMGCS2P54868 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC20.19■□□□□ 0.82
HMGCS2P54868 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
HMGCS2P54868 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC20.19■□□□□ 0.82
HMGCS2P54868 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC20.19■□□□□ 0.82
HMGCS2P54868 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
HMGCS2P54868 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC20.19■□□□□ 0.82
HMGCS2P54868 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGCS2P54868 AL590787.1-201ENST00000568856 1315 ntBASIC20.19■□□□□ 0.82
HMGCS2P54868 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGCS2P54868 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGCS2P54868 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
HMGCS2P54868 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGCS2P54868 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.19■□□□□ 0.82
HMGCS2P54868 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGCS2P54868 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.18■□□□□ 0.82
HMGCS2P54868 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.18■□□□□ 0.82
HMGCS2P54868 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
HMGCS2P54868 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HMGCS2P54868 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
HMGCS2P54868 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGCS2P54868 PNMT-202ENST00000394246 821 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGCS2P54868 ACTG1P4-201ENST00000425123 1122 ntBASIC20.18■□□□□ 0.82
HMGCS2P54868 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC20.18■□□□□ 0.82
HMGCS2P54868 CXCL1P1-201ENST00000502804 216 ntBASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms