Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.73■□□□□ 0.43
PTPN4P29074 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN4P29074 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
PTPN4P29074 AL138688.1-201ENST00000624851 1594 ntBASIC17.73■□□□□ 0.43
PTPN4P29074 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.73■□□□□ 0.43
PTPN4P29074 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN4P29074 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
PTPN4P29074 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.72■□□□□ 0.43
PTPN4P29074 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
PTPN4P29074 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
PTPN4P29074 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
PTPN4P29074 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
PTPN4P29074 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.72■□□□□ 0.43
PTPN4P29074 GPAT2P1-201ENST00000444924 1672 ntBASIC17.72■□□□□ 0.43
PTPN4P29074 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
PTPN4P29074 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 KRT18P48-201ENST00000434763 852 ntBASIC17.72■□□□□ 0.43
PTPN4P29074 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.72■□□□□ 0.43
PTPN4P29074 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.72■□□□□ 0.43
PTPN4P29074 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.72■□□□□ 0.43
PTPN4P29074 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.72■□□□□ 0.43
PTPN4P29074 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
PTPN4P29074 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.72■□□□□ 0.43
PTPN4P29074 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 KRT8P3-201ENST00000519669 1449 ntBASIC17.72■□□□□ 0.43
PTPN4P29074 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PTPN4P29074 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
PTPN4P29074 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 AL391005.1-201ENST00000623953 2435 ntBASIC17.71■□□□□ 0.43
PTPN4P29074 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.71■□□□□ 0.43
PTPN4P29074 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.71■□□□□ 0.43
PTPN4P29074 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
PTPN4P29074 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
PTPN4P29074 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.71■□□□□ 0.43
PTPN4P29074 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
PTPN4P29074 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.71■□□□□ 0.43
PTPN4P29074 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.71■□□□□ 0.43
PTPN4P29074 KRT18P41-201ENST00000518924 1277 ntBASIC17.71■□□□□ 0.43
PTPN4P29074 KRT126P-201ENST00000549467 1181 ntBASIC17.71■□□□□ 0.43
PTPN4P29074 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.71■□□□□ 0.43
PTPN4P29074 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.71■□□□□ 0.43
PTPN4P29074 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
PTPN4P29074 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
PTPN4P29074 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PTPN4P29074 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
PTPN4P29074 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
PTPN4P29074 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
PTPN4P29074 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN4P29074 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
PTPN4P29074 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.7■□□□□ 0.42
PTPN4P29074 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN4P29074 AL355312.1-201ENST00000407115 2176 ntBASIC17.7■□□□□ 0.42
PTPN4P29074 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN4P29074 CROCCP2-202ENST00000412962 2773 ntBASIC17.7■□□□□ 0.42
PTPN4P29074 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.7■□□□□ 0.42
PTPN4P29074 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.7■□□□□ 0.42
PTPN4P29074 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN4P29074 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN4P29074 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN4P29074 AC105020.1-201ENST00000435356 2205 ntBASIC17.7■□□□□ 0.42
PTPN4P29074 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms