Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
HMGB1P09429 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB1P09429 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC20.78■□□□□ 0.92
HMGB1P09429 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.78■□□□□ 0.92
HMGB1P09429 ATP5G2P1-201ENST00000433580 426 ntBASIC20.78■□□□□ 0.92
HMGB1P09429 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC20.78■□□□□ 0.92
HMGB1P09429 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
HMGB1P09429 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.78■□□□□ 0.92
HMGB1P09429 AC111152.3-201ENST00000569699 673 ntBASIC20.78■□□□□ 0.92
HMGB1P09429 AC109462.3-201ENST00000573934 613 ntBASIC20.78■□□□□ 0.92
HMGB1P09429 MIR3180-1-201ENST00000580374 94 ntBASIC20.78■□□□□ 0.92
HMGB1P09429 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.78■□□□□ 0.92
HMGB1P09429 MIR3180-3-201ENST00000584616 94 ntBASIC20.78■□□□□ 0.92
HMGB1P09429 NPAP1P7-201ENST00000613027 823 ntBASIC20.78■□□□□ 0.92
HMGB1P09429 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.78■□□□□ 0.92
HMGB1P09429 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
HMGB1P09429 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.78■□□□□ 0.92
HMGB1P09429 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB1P09429 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB1P09429 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.78■□□□□ 0.92
HMGB1P09429 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC20.78■□□□□ 0.92
HMGB1P09429 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB1P09429 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB1P09429 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB1P09429 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB1P09429 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB1P09429 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.77■□□□□ 0.92
HMGB1P09429 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC20.77■□□□□ 0.92
HMGB1P09429 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC20.77■□□□□ 0.92
HMGB1P09429 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
HMGB1P09429 MINOS1P3-201ENST00000457048 203 ntBASIC20.77■□□□□ 0.92
HMGB1P09429 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.77■□□□□ 0.92
HMGB1P09429 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.77■□□□□ 0.92
HMGB1P09429 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.77■□□□□ 0.92
HMGB1P09429 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
HMGB1P09429 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB1P09429 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
HMGB1P09429 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB1P09429 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.77■□□□□ 0.92
HMGB1P09429 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC20.77■□□□□ 0.91
HMGB1P09429 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.91
HMGB1P09429 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB1P09429 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
HMGB1P09429 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB1P09429 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.76■□□□□ 0.91
HMGB1P09429 TP73-AS1-210ENST00000637775 1455 ntBASIC20.76■□□□□ 0.91
HMGB1P09429 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
HMGB1P09429 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.76■□□□□ 0.91
HMGB1P09429 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
HMGB1P09429 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB1P09429 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB1P09429 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
HMGB1P09429 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB1P09429 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB1P09429 IGHV3-47-201ENST00000425060 335 ntBASIC20.76■□□□□ 0.91
HMGB1P09429 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB1P09429 LINC00265-3P-201ENST00000447588 903 ntBASIC20.76■□□□□ 0.91
HMGB1P09429 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.76■□□□□ 0.91
HMGB1P09429 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
HMGB1P09429 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB1P09429 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB1P09429 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC20.76■□□□□ 0.91
HMGB1P09429 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB1P09429 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB1P09429 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB1P09429 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.76■□□□□ 0.91
HMGB1P09429 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB1P09429 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
HMGB1P09429 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGB1P09429 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB1P09429 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
HMGB1P09429 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
HMGB1P09429 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGB1P09429 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGB1P09429 NSUN5P1-202ENST00000421140 1535 ntBASIC20.75■□□□□ 0.91
HMGB1P09429 NSUN5P2-203ENST00000457352 1529 ntBASIC20.75■□□□□ 0.91
HMGB1P09429 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB1P09429 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB1P09429 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB1P09429 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGB1P09429 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB1P09429 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGB1P09429 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.75■□□□□ 0.91
HMGB1P09429 TK1-204ENST00000590430 683 ntTSL 3 BASIC20.75■□□□□ 0.91
HMGB1P09429 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB1P09429 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB1P09429 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
HMGB1P09429 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
HMGB1P09429 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB1P09429 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.75■□□□□ 0.91
HMGB1P09429 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGB1P09429 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB1P09429 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB1P09429 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGB1P09429 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB1P09429 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB1P09429 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGB1P09429 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB1P09429 AL353593.2-201ENST00000602529 1483 ntBASIC20.75■□□□□ 0.91
HMGB1P09429 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms