Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.36■□□□□ 0.37
TRIM13O60858 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
TRIM13O60858 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.36■□□□□ 0.37
TRIM13O60858 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
TRIM13O60858 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRIM13O60858 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM13O60858 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
TRIM13O60858 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TRIM13O60858 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM13O60858 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM13O60858 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
TRIM13O60858 AC060834.1-201ENST00000443027 2032 ntBASIC17.35■□□□□ 0.37
TRIM13O60858 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM13O60858 AGGF1P2-201ENST00000426656 2106 ntBASIC17.35■□□□□ 0.37
TRIM13O60858 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM13O60858 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM13O60858 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM13O60858 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM13O60858 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.35■□□□□ 0.37
TRIM13O60858 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
TRIM13O60858 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRIM13O60858 LINC01311-201ENST00000565162 1445 ntBASIC17.35■□□□□ 0.37
TRIM13O60858 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
TRIM13O60858 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRIM13O60858 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM13O60858 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM13O60858 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM13O60858 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM13O60858 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM13O60858 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM13O60858 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRIM13O60858 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 MMP23A-201ENST00000234610 1017 ntBASIC17.34■□□□□ 0.37
TRIM13O60858 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM13O60858 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM13O60858 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM13O60858 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM13O60858 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM13O60858 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM13O60858 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 AC112698.1-201ENST00000510299 916 ntBASIC17.34■□□□□ 0.37
TRIM13O60858 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM13O60858 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM13O60858 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM13O60858 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
TRIM13O60858 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.34■□□□□ 0.37
TRIM13O60858 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.34■□□□□ 0.37
TRIM13O60858 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.34■□□□□ 0.37
TRIM13O60858 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM13O60858 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
TRIM13O60858 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM13O60858 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.34■□□□□ 0.37
TRIM13O60858 AC116353.5-201ENST00000638148 1699 ntBASIC17.34■□□□□ 0.37
TRIM13O60858 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TRIM13O60858 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
TRIM13O60858 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.34■□□□□ 0.37
TRIM13O60858 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRIM13O60858 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
TRIM13O60858 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
TRIM13O60858 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM13O60858 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM13O60858 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRIM13O60858 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
TRIM13O60858 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.33■□□□□ 0.37
TRIM13O60858 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
TRIM13O60858 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
TRIM13O60858 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.33■□□□□ 0.36
TRIM13O60858 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM13O60858 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM13O60858 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM13O60858 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms