Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXC11O43248 NOC2LP1-202ENST00000452600 2235 ntBASIC17.88■□□□□ 0.45
HOXC11O43248 FZD10-202ENST00000539839 3282 ntBASIC17.88■□□□□ 0.45
HOXC11O43248 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.88■□□□□ 0.45
HOXC11O43248 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HOXC11O43248 GPR89P-201ENST00000407924 1495 ntBASIC17.88■□□□□ 0.45
HOXC11O43248 AC097637.2-201ENST00000624096 1997 ntBASIC17.88■□□□□ 0.45
HOXC11O43248 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.88■□□□□ 0.45
HOXC11O43248 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
HOXC11O43248 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC11O43248 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC11O43248 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC11O43248 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
HOXC11O43248 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC11O43248 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
HOXC11O43248 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
HOXC11O43248 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.87■□□□□ 0.45
HOXC11O43248 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
HOXC11O43248 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC11O43248 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.87■□□□□ 0.45
HOXC11O43248 RPSAP43-201ENST00000402237 625 ntBASIC17.87■□□□□ 0.45
HOXC11O43248 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.87■□□□□ 0.45
HOXC11O43248 PRSS29P-201ENST00000440800 595 ntBASIC17.87■□□□□ 0.45
HOXC11O43248 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.87■□□□□ 0.45
HOXC11O43248 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
HOXC11O43248 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.87■□□□□ 0.45
HOXC11O43248 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.87■□□□□ 0.45
HOXC11O43248 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.87■□□□□ 0.45
HOXC11O43248 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.87■□□□□ 0.45
HOXC11O43248 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC11O43248 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC11O43248 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC11O43248 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC11O43248 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC11O43248 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC11O43248 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.87■□□□□ 0.45
HOXC11O43248 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC11O43248 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC11O43248 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC11O43248 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC11O43248 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC11O43248 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HOXC11O43248 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.87■□□□□ 0.45
HOXC11O43248 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC11O43248 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC11O43248 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
HOXC11O43248 AC138028.4-201ENST00000564984 1845 ntBASIC17.86■□□□□ 0.45
HOXC11O43248 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC11O43248 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
HOXC11O43248 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.86■□□□□ 0.45
HOXC11O43248 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC11O43248 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.86■□□□□ 0.45
HOXC11O43248 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC11O43248 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC11O43248 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC11O43248 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.86■□□□□ 0.45
HOXC11O43248 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.86■□□□□ 0.45
HOXC11O43248 LINC00982-205ENST00000420957 435 ntBASIC17.86■□□□□ 0.45
HOXC11O43248 VN2R19P-201ENST00000442399 1052 ntBASIC17.86■□□□□ 0.45
HOXC11O43248 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.86■□□□□ 0.45
HOXC11O43248 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.86■□□□□ 0.45
HOXC11O43248 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.86■□□□□ 0.45
HOXC11O43248 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.86■□□□□ 0.45
HOXC11O43248 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.86■□□□□ 0.45
HOXC11O43248 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.86■□□□□ 0.45
HOXC11O43248 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.86■□□□□ 0.45
HOXC11O43248 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.86■□□□□ 0.45
HOXC11O43248 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.86■□□□□ 0.45
HOXC11O43248 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
HOXC11O43248 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.86■□□□□ 0.45
HOXC11O43248 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.86■□□□□ 0.45
HOXC11O43248 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC11O43248 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC11O43248 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC11O43248 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC11O43248 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.86■□□□□ 0.45
HOXC11O43248 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC11O43248 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC11O43248 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC11O43248 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.86■□□□□ 0.45
HOXC11O43248 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.86■□□□□ 0.45
HOXC11O43248 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC11O43248 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HOXC11O43248 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
HOXC11O43248 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HOXC11O43248 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HOXC11O43248 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HOXC11O43248 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HOXC11O43248 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HOXC11O43248 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HOXC11O43248 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HOXC11O43248 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.85■□□□□ 0.45
HOXC11O43248 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HOXC11O43248 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.85■□□□□ 0.45
HOXC11O43248 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
HOXC11O43248 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.85■□□□□ 0.45
HOXC11O43248 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
HOXC11O43248 CRYGEP-201ENST00000412192 528 ntBASIC17.85■□□□□ 0.45
HOXC11O43248 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.85■□□□□ 0.45
HOXC11O43248 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms