Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CLDN3O15551 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.26■□□□□ 0.67
CLDN3O15551 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.26■□□□□ 0.67
CLDN3O15551 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CLDN3O15551 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLDN3O15551 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLDN3O15551 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLDN3O15551 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.26■□□□□ 0.67
CLDN3O15551 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CLDN3O15551 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.26■□□□□ 0.67
CLDN3O15551 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CLDN3O15551 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CLDN3O15551 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
CLDN3O15551 AD001527.2-201ENST00000622994 785 ntBASIC19.26■□□□□ 0.67
CLDN3O15551 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.26■□□□□ 0.67
CLDN3O15551 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.26■□□□□ 0.67
CLDN3O15551 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLDN3O15551 AC006116.8-202ENST00000587620 1550 ntBASIC19.26■□□□□ 0.67
CLDN3O15551 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CLDN3O15551 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CLDN3O15551 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CLDN3O15551 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
CLDN3O15551 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.25■□□□□ 0.67
CLDN3O15551 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN3O15551 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN3O15551 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN3O15551 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN3O15551 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN3O15551 AL049757.1-201ENST00000616842 1596 ntBASIC19.25■□□□□ 0.67
CLDN3O15551 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CLDN3O15551 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
CLDN3O15551 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN3O15551 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.25■□□□□ 0.67
CLDN3O15551 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CLDN3O15551 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CLDN3O15551 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.25■□□□□ 0.67
CLDN3O15551 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.25■□□□□ 0.67
CLDN3O15551 MTDHP3-201ENST00000594186 672 ntBASIC19.25■□□□□ 0.67
CLDN3O15551 AL121912.1-201ENST00000603683 238 ntBASIC19.25■□□□□ 0.67
CLDN3O15551 AC008608.2-201ENST00000606089 416 ntBASIC19.25■□□□□ 0.67
CLDN3O15551 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN3O15551 AL355877.3-201ENST00000622820 899 ntBASIC19.25■□□□□ 0.67
CLDN3O15551 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.25■□□□□ 0.67
CLDN3O15551 AP000867.4-201ENST00000641616 219 ntBASIC19.25■□□□□ 0.67
CLDN3O15551 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN3O15551 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN3O15551 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN3O15551 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CLDN3O15551 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
CLDN3O15551 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.25■□□□□ 0.67
CLDN3O15551 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN3O15551 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN3O15551 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CLDN3O15551 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.24■□□□□ 0.67
CLDN3O15551 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLDN3O15551 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLDN3O15551 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CLDN3O15551 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CLDN3O15551 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLDN3O15551 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLDN3O15551 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLDN3O15551 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.24■□□□□ 0.67
CLDN3O15551 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CLDN3O15551 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CLDN3O15551 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLDN3O15551 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CLDN3O15551 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CLDN3O15551 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
CLDN3O15551 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CLDN3O15551 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CLDN3O15551 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLDN3O15551 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.24■□□□□ 0.67
CLDN3O15551 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CLDN3O15551 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLDN3O15551 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLDN3O15551 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLDN3O15551 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CLDN3O15551 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.24■□□□□ 0.67
CLDN3O15551 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.24■□□□□ 0.67
CLDN3O15551 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CLDN3O15551 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CLDN3O15551 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19.24■□□□□ 0.67
CLDN3O15551 LTB4R2-202ENST00000528054 3092 ntBASIC19.23■□□□□ 0.67
CLDN3O15551 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
CLDN3O15551 PMPCAP1-201ENST00000508114 1576 ntBASIC19.23■□□□□ 0.67
CLDN3O15551 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLDN3O15551 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.23■□□□□ 0.67
CLDN3O15551 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CLDN3O15551 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CLDN3O15551 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLDN3O15551 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.23■□□□□ 0.67
CLDN3O15551 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.23■□□□□ 0.67
CLDN3O15551 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CLDN3O15551 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLDN3O15551 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CLDN3O15551 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.23■□□□□ 0.67
CLDN3O15551 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CLDN3O15551 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC19.23■□□□□ 0.67
CLDN3O15551 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CLDN3O15551 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms