Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PDLIM1O00151 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PDLIM1O00151 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
PDLIM1O00151 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
PDLIM1O00151 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.83■□□□□ 0.29
PDLIM1O00151 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.83■□□□□ 0.29
PDLIM1O00151 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
PDLIM1O00151 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PDLIM1O00151 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
PDLIM1O00151 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PDLIM1O00151 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.83■□□□□ 0.28
PDLIM1O00151 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM1O00151 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM1O00151 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM1O00151 UROS-202ENST00000368778 1556 ntTSL 2 BASIC16.83■□□□□ 0.28
PDLIM1O00151 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM1O00151 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM1O00151 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC16.83■□□□□ 0.28
PDLIM1O00151 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
PDLIM1O00151 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM1O00151 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.83■□□□□ 0.28
PDLIM1O00151 MFAP1P1-201ENST00000442257 1255 ntBASIC16.83■□□□□ 0.28
PDLIM1O00151 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM1O00151 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM1O00151 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM1O00151 SLC25A1P4-201ENST00000567977 778 ntBASIC16.83■□□□□ 0.28
PDLIM1O00151 ARL16-209ENST00000573715 763 ntTSL 3 BASIC16.83■□□□□ 0.28
PDLIM1O00151 ARL16-211ENST00000576135 694 ntTSL 3 BASIC16.83■□□□□ 0.28
PDLIM1O00151 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.83■□□□□ 0.28
PDLIM1O00151 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.83■□□□□ 0.28
PDLIM1O00151 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.83■□□□□ 0.28
PDLIM1O00151 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM1O00151 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM1O00151 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PDLIM1O00151 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.82■□□□□ 0.28
PDLIM1O00151 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PDLIM1O00151 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.82■□□□□ 0.28
PDLIM1O00151 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.82■□□□□ 0.28
PDLIM1O00151 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PDLIM1O00151 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM1O00151 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
PDLIM1O00151 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.82■□□□□ 0.28
PDLIM1O00151 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM1O00151 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM1O00151 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.82■□□□□ 0.28
PDLIM1O00151 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM1O00151 CYP2D8P-201ENST00000433633 1490 ntBASIC16.82■□□□□ 0.28
PDLIM1O00151 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM1O00151 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PDLIM1O00151 CRYGFP-201ENST00000418459 633 ntBASIC16.82■□□□□ 0.28
PDLIM1O00151 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.82■□□□□ 0.28
PDLIM1O00151 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.82■□□□□ 0.28
PDLIM1O00151 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM1O00151 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC16.82■□□□□ 0.28
PDLIM1O00151 AC097493.4-201ENST00000641197 219 ntBASIC16.82■□□□□ 0.28
PDLIM1O00151 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM1O00151 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM1O00151 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM1O00151 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM1O00151 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.82■□□□□ 0.28
PDLIM1O00151 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM1O00151 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM1O00151 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PDLIM1O00151 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
PDLIM1O00151 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.81■□□□□ 0.28
PDLIM1O00151 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.81■□□□□ 0.28
PDLIM1O00151 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.81■□□□□ 0.28
PDLIM1O00151 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.81■□□□□ 0.28
PDLIM1O00151 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM1O00151 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.81■□□□□ 0.28
PDLIM1O00151 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM1O00151 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM1O00151 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM1O00151 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM1O00151 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM1O00151 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM1O00151 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM1O00151 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PDLIM1O00151 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM1O00151 AC010947.1-201ENST00000623454 693 ntBASIC16.81■□□□□ 0.28
PDLIM1O00151 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM1O00151 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
PDLIM1O00151 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM1O00151 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM1O00151 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PDLIM1O00151 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM1O00151 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM1O00151 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PDLIM1O00151 AC026691.1-201ENST00000602502 2017 ntBASIC16.8■□□□□ 0.28
PDLIM1O00151 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
PDLIM1O00151 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.8■□□□□ 0.28
PDLIM1O00151 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM1O00151 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC16.8■□□□□ 0.28
PDLIM1O00151 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PDLIM1O00151 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM1O00151 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM1O00151 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM1O00151 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
PDLIM1O00151 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PDLIM1O00151 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms