Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 BX276092.7-203ENST00000637198 1536 ntBASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.67■□□□□ 0.42
TRIM49D1C9J1S8 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 GCSHP2-201ENST00000560971 527 ntBASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.66■□□□□ 0.42
TRIM49D1C9J1S8 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 MMP23A-201ENST00000234610 1017 ntBASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 AC005104.2-201ENST00000427818 678 ntBASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 AC004263.2-201ENST00000617183 678 ntBASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRIM49D1C9J1S8 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TRIM49D1C9J1S8 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.64■□□□□ 0.42
TRIM49D1C9J1S8 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
TRIM49D1C9J1S8 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
TRIM49D1C9J1S8 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms