Protein–RNA interactions for Protein: A0A140T963

RNF103-CHMP3, RNF103-CHMP3 readthrough (Fragment), humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF103-CHMP3A0A140T963 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNF103-CHMP3A0A140T963 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.02■□□□□ 0.32
RNF103-CHMP3A0A140T963 AC093827.2-201ENST00000512654 315 ntBASIC17.02■□□□□ 0.32
RNF103-CHMP3A0A140T963 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.02■□□□□ 0.32
RNF103-CHMP3A0A140T963 MIR3917-201ENST00000580971 93 ntBASIC17.02■□□□□ 0.32
RNF103-CHMP3A0A140T963 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RNF103-CHMP3A0A140T963 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNF103-CHMP3A0A140T963 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.02■□□□□ 0.32
RNF103-CHMP3A0A140T963 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.02■□□□□ 0.32
RNF103-CHMP3A0A140T963 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.02■□□□□ 0.32
RNF103-CHMP3A0A140T963 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
RNF103-CHMP3A0A140T963 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RNF103-CHMP3A0A140T963 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
RNF103-CHMP3A0A140T963 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
RNF103-CHMP3A0A140T963 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
RNF103-CHMP3A0A140T963 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
RNF103-CHMP3A0A140T963 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
RNF103-CHMP3A0A140T963 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
RNF103-CHMP3A0A140T963 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
RNF103-CHMP3A0A140T963 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
RNF103-CHMP3A0A140T963 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
RNF103-CHMP3A0A140T963 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
RNF103-CHMP3A0A140T963 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 AP000523.1-201ENST00000398242 1049 ntBASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 AL596275.1-201ENST00000423464 877 ntBASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 ECEL1P3-201ENST00000427961 737 ntBASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
RNF103-CHMP3A0A140T963 UBALD1-205ENST00000590891 2641 ntBASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
RNF103-CHMP3A0A140T963 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
RNF103-CHMP3A0A140T963 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.99■□□□□ 0.31
RNF103-CHMP3A0A140T963 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RNF103-CHMP3A0A140T963 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
RNF103-CHMP3A0A140T963 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF103-CHMP3A0A140T963 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF103-CHMP3A0A140T963 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF103-CHMP3A0A140T963 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF103-CHMP3A0A140T963 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF103-CHMP3A0A140T963 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.99■□□□□ 0.31
RNF103-CHMP3A0A140T963 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
RNF103-CHMP3A0A140T963 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
RNF103-CHMP3A0A140T963 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms