Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 AC092384.3-202ENST00000564646 2873 ntBASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCX3AQ9NNX9 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 SUDS3P1-201ENST00000505831 966 ntBASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 STOX2-205ENST00000513034 807 ntTSL 3 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 CRK-204ENST00000574295 1391 ntTSL 5 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VCX3AQ9NNX9 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 FAM45BP-202ENST00000592932 1624 ntBASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 AC092437.1-201ENST00000624794 1048 ntBASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
VCX3AQ9NNX9 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms