Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 LINC01126-201ENST00000623515 1646 ntBASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 AL121761.2-201ENST00000598007 1648 ntBASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.23■□□□□ 0.03
CHMP1AQ9HD42 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 PHB2-202ENST00000440277 996 ntTSL 5 BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 WWOX-216ENST00000569818 525 ntBASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CHMP1AQ9HD42 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 AC006116.8-202ENST00000587620 1550 ntBASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CHMP1AQ9HD42 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms