Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC15.27■□□□□ 0.03
COL12A1Q99715 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL12A1Q99715 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL12A1Q99715 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL12A1Q99715 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL12A1Q99715 NME6-203ENST00000415644 849 ntTSL 2 BASIC15.27■□□□□ 0.03
COL12A1Q99715 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.27■□□□□ 0.03
COL12A1Q99715 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL12A1Q99715 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC15.27■□□□□ 0.03
COL12A1Q99715 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC15.27■□□□□ 0.03
COL12A1Q99715 POLE2-203ENST00000553805 496 ntTSL 2 BASIC15.27■□□□□ 0.03
COL12A1Q99715 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC15.27■□□□□ 0.03
COL12A1Q99715 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL12A1Q99715 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC15.27■□□□□ 0.03
COL12A1Q99715 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC15.27■□□□□ 0.03
COL12A1Q99715 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
COL12A1Q99715 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 COBL-210ENST00000632460 1941 ntTSL 5 BASIC15.26■□□□□ 0.03
COL12A1Q99715 AC097637.2-201ENST00000624096 1997 ntBASIC15.26■□□□□ 0.03
COL12A1Q99715 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 S100A2-206ENST00000497140 697 ntTSL 2 BASIC15.26■□□□□ 0.03
COL12A1Q99715 AC112191.1-201ENST00000523689 701 ntBASIC15.26■□□□□ 0.03
COL12A1Q99715 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
COL12A1Q99715 AC009118.2-201ENST00000613275 655 ntBASIC15.26■□□□□ 0.03
COL12A1Q99715 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC15.26■□□□□ 0.03
COL12A1Q99715 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
COL12A1Q99715 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC15.26■□□□□ 0.03
COL12A1Q99715 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.26■□□□□ 0.03
COL12A1Q99715 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 ESPNP-201ENST00000270691 2015 ntBASIC15.26■□□□□ 0.03
COL12A1Q99715 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.26■□□□□ 0.03
COL12A1Q99715 RNA5SP423-201ENST00000517127 109 ntBASIC15.26■□□□□ 0.03
COL12A1Q99715 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.26■□□□□ 0.03
COL12A1Q99715 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC15.26■□□□□ 0.03
COL12A1Q99715 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC15.26■□□□□ 0.03
COL12A1Q99715 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC15.26■□□□□ 0.03
COL12A1Q99715 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
COL12A1Q99715 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL12A1Q99715 AC005237.2-201ENST00000434368 219 ntBASIC15.25■□□□□ 0.03
COL12A1Q99715 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC15.25■□□□□ 0.03
COL12A1Q99715 AC119751.2-201ENST00000504529 210 ntBASIC15.25■□□□□ 0.03
COL12A1Q99715 KRT8P23-201ENST00000560090 1207 ntBASIC15.25■□□□□ 0.03
COL12A1Q99715 LINC01225-203ENST00000563550 1244 ntBASIC15.25■□□□□ 0.03
COL12A1Q99715 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.25■□□□□ 0.03
COL12A1Q99715 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC15.25■□□□□ 0.03
COL12A1Q99715 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL12A1Q99715 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
COL12A1Q99715 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC15.25■□□□□ 0.03
COL12A1Q99715 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
COL12A1Q99715 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL12A1Q99715 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL12A1Q99715 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL12A1Q99715 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC15.25■□□□□ 0.03
COL12A1Q99715 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC15.25■□□□□ 0.03
COL12A1Q99715 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.25■□□□□ 0.03
COL12A1Q99715 COX11-210ENST00000639671 696 ntBASIC15.25■□□□□ 0.03
COL12A1Q99715 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL12A1Q99715 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC15.25■□□□□ 0.03
COL12A1Q99715 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC15.25■□□□□ 0.03
COL12A1Q99715 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL12A1Q99715 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL12A1Q99715 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL12A1Q99715 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL12A1Q99715 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC15.25■□□□□ 0.03
COL12A1Q99715 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL12A1Q99715 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
COL12A1Q99715 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
COL12A1Q99715 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.25■□□□□ 0.03
COL12A1Q99715 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.25■□□□□ 0.03
COL12A1Q99715 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
COL12A1Q99715 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL12A1Q99715 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
COL12A1Q99715 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
COL12A1Q99715 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL12A1Q99715 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.24■□□□□ 0.03
COL12A1Q99715 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
COL12A1Q99715 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL12A1Q99715 AL158211.3-201ENST00000607385 239 ntBASIC15.24■□□□□ 0.03
COL12A1Q99715 AC003101.2-201ENST00000612557 442 ntBASIC15.24■□□□□ 0.03
COL12A1Q99715 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL12A1Q99715 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL12A1Q99715 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
COL12A1Q99715 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL12A1Q99715 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL12A1Q99715 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL12A1Q99715 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms