Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP28Q96RU2 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.17■□□□□ 0.82
USP28Q96RU2 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC20.17■□□□□ 0.82
USP28Q96RU2 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.17■□□□□ 0.82
USP28Q96RU2 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP28Q96RU2 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP28Q96RU2 AL121761.2-201ENST00000598007 1648 ntBASIC20.16■□□□□ 0.82
USP28Q96RU2 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP28Q96RU2 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP28Q96RU2 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP28Q96RU2 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP28Q96RU2 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP28Q96RU2 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP28Q96RU2 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP28Q96RU2 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.16■□□□□ 0.82
USP28Q96RU2 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP28Q96RU2 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
USP28Q96RU2 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP28Q96RU2 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP28Q96RU2 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP28Q96RU2 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.16■□□□□ 0.82
USP28Q96RU2 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.16■□□□□ 0.82
USP28Q96RU2 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP28Q96RU2 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP28Q96RU2 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
USP28Q96RU2 AC016396.2-201ENST00000562575 1417 ntBASIC20.16■□□□□ 0.82
USP28Q96RU2 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.16■□□□□ 0.82
USP28Q96RU2 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP28Q96RU2 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.16■□□□□ 0.82
USP28Q96RU2 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP28Q96RU2 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP28Q96RU2 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
USP28Q96RU2 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP28Q96RU2 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP28Q96RU2 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP28Q96RU2 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
USP28Q96RU2 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP28Q96RU2 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP28Q96RU2 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
USP28Q96RU2 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC20.15■□□□□ 0.82
USP28Q96RU2 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.15■□□□□ 0.82
USP28Q96RU2 AC022616.7-201ENST00000525383 220 ntBASIC20.15■□□□□ 0.82
USP28Q96RU2 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.15■□□□□ 0.82
USP28Q96RU2 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.15■□□□□ 0.82
USP28Q96RU2 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
USP28Q96RU2 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.15■□□□□ 0.82
USP28Q96RU2 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.15■□□□□ 0.82
USP28Q96RU2 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP28Q96RU2 AC097374.2-201ENST00000618617 1306 ntBASIC20.15■□□□□ 0.82
USP28Q96RU2 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP28Q96RU2 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP28Q96RU2 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP28Q96RU2 AC116353.5-201ENST00000638148 1699 ntBASIC20.15■□□□□ 0.82
USP28Q96RU2 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP28Q96RU2 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP28Q96RU2 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
USP28Q96RU2 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP28Q96RU2 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC20.15■□□□□ 0.82
USP28Q96RU2 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC20.15■□□□□ 0.82
USP28Q96RU2 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
USP28Q96RU2 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC20.14■□□□□ 0.82
USP28Q96RU2 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
USP28Q96RU2 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.82
USP28Q96RU2 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
USP28Q96RU2 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC20.14■□□□□ 0.82
USP28Q96RU2 AC060834.1-201ENST00000443027 2032 ntBASIC20.14■□□□□ 0.81
USP28Q96RU2 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP28Q96RU2 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP28Q96RU2 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
USP28Q96RU2 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP28Q96RU2 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
USP28Q96RU2 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP28Q96RU2 BAALC-202ENST00000306391 243 ntTSL 5 BASIC20.14■□□□□ 0.81
USP28Q96RU2 BAALC-204ENST00000330955 222 ntTSL 5 BASIC20.14■□□□□ 0.81
USP28Q96RU2 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USP28Q96RU2 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP28Q96RU2 COX5BP2-201ENST00000392354 334 ntBASIC20.14■□□□□ 0.81
USP28Q96RU2 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.14■□□□□ 0.81
USP28Q96RU2 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC20.14■□□□□ 0.81
USP28Q96RU2 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.14■□□□□ 0.81
USP28Q96RU2 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.14■□□□□ 0.81
USP28Q96RU2 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP28Q96RU2 RN7SL850P-201ENST00000579959 291 ntBASIC20.14■□□□□ 0.81
USP28Q96RU2 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.14■□□□□ 0.81
USP28Q96RU2 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
USP28Q96RU2 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.14■□□□□ 0.81
USP28Q96RU2 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USP28Q96RU2 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC20.14■□□□□ 0.81
USP28Q96RU2 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP28Q96RU2 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP28Q96RU2 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
USP28Q96RU2 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP28Q96RU2 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USP28Q96RU2 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
USP28Q96RU2 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USP28Q96RU2 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.13■□□□□ 0.81
USP28Q96RU2 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
USP28Q96RU2 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP28Q96RU2 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USP28Q96RU2 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms