Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BRF1Q92994 LYSMD4-203ENST00000378904 2122 ntBASIC20.75■□□□□ 0.91
BRF1Q92994 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC20.75■□□□□ 0.91
BRF1Q92994 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRF1Q92994 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
BRF1Q92994 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.75■□□□□ 0.91
BRF1Q92994 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRF1Q92994 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
BRF1Q92994 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.75■□□□□ 0.91
BRF1Q92994 AC233702.3-201ENST00000578656 1387 ntBASIC20.75■□□□□ 0.91
BRF1Q92994 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.75■□□□□ 0.91
BRF1Q92994 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRF1Q92994 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRF1Q92994 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.75■□□□□ 0.91
BRF1Q92994 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20.75■□□□□ 0.91
BRF1Q92994 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20.75■□□□□ 0.91
BRF1Q92994 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
BRF1Q92994 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRF1Q92994 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
BRF1Q92994 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
BRF1Q92994 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC20.75■□□□□ 0.91
BRF1Q92994 DRAXINP1-201ENST00000437611 948 ntBASIC20.75■□□□□ 0.91
BRF1Q92994 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC20.75■□□□□ 0.91
BRF1Q92994 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC20.75■□□□□ 0.91
BRF1Q92994 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.75■□□□□ 0.91
BRF1Q92994 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BRF1Q92994 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
BRF1Q92994 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.75■□□□□ 0.91
BRF1Q92994 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.75■□□□□ 0.91
BRF1Q92994 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRF1Q92994 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
BRF1Q92994 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
BRF1Q92994 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
BRF1Q92994 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.74■□□□□ 0.91
BRF1Q92994 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BRF1Q92994 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BRF1Q92994 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BRF1Q92994 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BRF1Q92994 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
BRF1Q92994 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BRF1Q92994 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC20.74■□□□□ 0.91
BRF1Q92994 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.74■□□□□ 0.91
BRF1Q92994 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BRF1Q92994 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
BRF1Q92994 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
BRF1Q92994 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.74■□□□□ 0.91
BRF1Q92994 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.74■□□□□ 0.91
BRF1Q92994 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
BRF1Q92994 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.74■□□□□ 0.91
BRF1Q92994 TOB2P1-201ENST00000469761 992 ntBASIC20.74■□□□□ 0.91
BRF1Q92994 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.74■□□□□ 0.91
BRF1Q92994 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC20.74■□□□□ 0.91
BRF1Q92994 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.74■□□□□ 0.91
BRF1Q92994 CIB2-208ENST00000560618 804 ntTSL 2 BASIC20.74■□□□□ 0.91
BRF1Q92994 MPI-205ENST00000562606 1052 ntTSL 3 BASIC20.74■□□□□ 0.91
BRF1Q92994 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.74■□□□□ 0.91
BRF1Q92994 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.74■□□□□ 0.91
BRF1Q92994 MIR3180-1-201ENST00000580374 94 ntBASIC20.74■□□□□ 0.91
BRF1Q92994 MIR3180-3-201ENST00000584616 94 ntBASIC20.74■□□□□ 0.91
BRF1Q92994 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
BRF1Q92994 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.74■□□□□ 0.91
BRF1Q92994 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
BRF1Q92994 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
BRF1Q92994 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.74■□□□□ 0.91
BRF1Q92994 AC080080.1-201ENST00000625121 2420 ntBASIC20.74■□□□□ 0.91
BRF1Q92994 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
BRF1Q92994 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC20.74■□□□□ 0.91
BRF1Q92994 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
BRF1Q92994 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC20.73■□□□□ 0.91
BRF1Q92994 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
BRF1Q92994 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.73■□□□□ 0.91
BRF1Q92994 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.73■□□□□ 0.91
BRF1Q92994 AC091076.1-201ENST00000610741 619 ntBASIC20.73■□□□□ 0.91
BRF1Q92994 NPAP1P7-201ENST00000613027 823 ntBASIC20.73■□□□□ 0.91
BRF1Q92994 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.73■□□□□ 0.91
BRF1Q92994 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.73■□□□□ 0.91
BRF1Q92994 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
BRF1Q92994 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms