Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC12.5□□□□□ -0.41
COL7A1Q02388 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC12.5□□□□□ -0.41
COL7A1Q02388 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC12.5□□□□□ -0.41
COL7A1Q02388 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC12.5□□□□□ -0.41
COL7A1Q02388 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
COL7A1Q02388 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC12.5□□□□□ -0.41
COL7A1Q02388 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC12.5□□□□□ -0.41
COL7A1Q02388 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC12.5□□□□□ -0.41
COL7A1Q02388 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC12.5□□□□□ -0.41
COL7A1Q02388 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC12.5□□□□□ -0.41
COL7A1Q02388 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC12.5□□□□□ -0.41
COL7A1Q02388 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
COL7A1Q02388 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL7A1Q02388 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
COL7A1Q02388 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
COL7A1Q02388 ANO7L1-203ENST00000602586 1720 ntBASIC12.49□□□□□ -0.41
COL7A1Q02388 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
COL7A1Q02388 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC12.49□□□□□ -0.41
COL7A1Q02388 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
COL7A1Q02388 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC12.49□□□□□ -0.41
COL7A1Q02388 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
COL7A1Q02388 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC12.49□□□□□ -0.41
COL7A1Q02388 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC12.49□□□□□ -0.41
COL7A1Q02388 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC12.49□□□□□ -0.41
COL7A1Q02388 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC12.49□□□□□ -0.41
COL7A1Q02388 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC12.49□□□□□ -0.41
COL7A1Q02388 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC12.49□□□□□ -0.41
COL7A1Q02388 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL7A1Q02388 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL7A1Q02388 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL7A1Q02388 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC12.49□□□□□ -0.41
COL7A1Q02388 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC12.49□□□□□ -0.41
COL7A1Q02388 HARS-203ENST00000431330 1774 ntTSL 2 BASIC12.49□□□□□ -0.41
COL7A1Q02388 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL7A1Q02388 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL7A1Q02388 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL7A1Q02388 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL7A1Q02388 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL7A1Q02388 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL7A1Q02388 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL7A1Q02388 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
COL7A1Q02388 AC004890.2-204ENST00000481968 304 ntBASIC12.49□□□□□ -0.41
COL7A1Q02388 CXCL1P1-201ENST00000502804 216 ntBASIC12.49□□□□□ -0.41
COL7A1Q02388 AC079140.1-201ENST00000508039 487 ntBASIC12.49□□□□□ -0.41
COL7A1Q02388 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC12.49□□□□□ -0.41
COL7A1Q02388 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC12.49□□□□□ -0.41
COL7A1Q02388 THTPA-204ENST00000554970 569 ntTSL 4 BASIC12.49□□□□□ -0.41
COL7A1Q02388 THTPA-206ENST00000556015 535 ntTSL 3 BASIC12.49□□□□□ -0.41
COL7A1Q02388 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL7A1Q02388 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
COL7A1Q02388 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL7A1Q02388 AL590787.1-201ENST00000568856 1315 ntBASIC12.49□□□□□ -0.41
COL7A1Q02388 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC12.49□□□□□ -0.41
COL7A1Q02388 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL7A1Q02388 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
COL7A1Q02388 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC12.48□□□□□ -0.41
COL7A1Q02388 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC12.48□□□□□ -0.41
COL7A1Q02388 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC12.48□□□□□ -0.41
COL7A1Q02388 DDX43P3-201ENST00000441064 443 ntBASIC12.48□□□□□ -0.41
COL7A1Q02388 NKTR-203ENST00000442970 646 ntTSL 2 BASIC12.48□□□□□ -0.41
COL7A1Q02388 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC12.48□□□□□ -0.41
COL7A1Q02388 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC12.48□□□□□ -0.41
COL7A1Q02388 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 AC007064.4-201ENST00000637740 555 ntBASIC12.48□□□□□ -0.41
COL7A1Q02388 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
COL7A1Q02388 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
COL7A1Q02388 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
COL7A1Q02388 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC12.48□□□□□ -0.41
COL7A1Q02388 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC12.48□□□□□ -0.41
COL7A1Q02388 PIN1P1-201ENST00000412108 996 ntBASIC12.48□□□□□ -0.41
COL7A1Q02388 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC12.48□□□□□ -0.41
COL7A1Q02388 FALEC-201ENST00000416894 566 ntTSL 3 BASIC12.48□□□□□ -0.41
COL7A1Q02388 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC12.48□□□□□ -0.41
COL7A1Q02388 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL7A1Q02388 ACA64.2-201ENST00000459014 129 ntBASIC12.48□□□□□ -0.41
COL7A1Q02388 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms