Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA3P55318 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC13.29□□□□□ -0.28
FOXA3P55318 AC008622.2-201ENST00000617006 1229 ntBASIC13.29□□□□□ -0.28
FOXA3P55318 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC13.29□□□□□ -0.28
FOXA3P55318 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA3P55318 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA3P55318 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA3P55318 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA3P55318 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
FOXA3P55318 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA3P55318 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC13.29□□□□□ -0.28
FOXA3P55318 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA3P55318 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
FOXA3P55318 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA3P55318 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
FOXA3P55318 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC13.29□□□□□ -0.28
FOXA3P55318 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA3P55318 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA3P55318 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA3P55318 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA3P55318 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
FOXA3P55318 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
FOXA3P55318 WT1-209ENST00000530998 2421 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA3P55318 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA3P55318 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA3P55318 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA3P55318 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
FOXA3P55318 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
FOXA3P55318 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC13.29□□□□□ -0.28
FOXA3P55318 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
FOXA3P55318 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA3P55318 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
FOXA3P55318 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC13.28□□□□□ -0.28
FOXA3P55318 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC13.28□□□□□ -0.28
FOXA3P55318 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
FOXA3P55318 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC13.28□□□□□ -0.28
FOXA3P55318 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 AC026271.2-201ENST00000428091 497 ntBASIC13.28□□□□□ -0.28
FOXA3P55318 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC13.28□□□□□ -0.28
FOXA3P55318 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC13.28□□□□□ -0.28
FOXA3P55318 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC13.28□□□□□ -0.28
FOXA3P55318 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC13.28□□□□□ -0.28
FOXA3P55318 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC13.28□□□□□ -0.28
FOXA3P55318 AC083880.1-201ENST00000608266 535 ntBASIC13.28□□□□□ -0.28
FOXA3P55318 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC13.28□□□□□ -0.28
FOXA3P55318 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC13.28□□□□□ -0.28
FOXA3P55318 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
FOXA3P55318 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC13.28□□□□□ -0.28
FOXA3P55318 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 AC016396.2-201ENST00000562575 1417 ntBASIC13.28□□□□□ -0.28
FOXA3P55318 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
FOXA3P55318 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA3P55318 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
FOXA3P55318 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC13.27□□□□□ -0.28
FOXA3P55318 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC13.27□□□□□ -0.28
FOXA3P55318 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC13.27□□□□□ -0.28
FOXA3P55318 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA3P55318 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA3P55318 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA3P55318 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC13.27□□□□□ -0.28
FOXA3P55318 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA3P55318 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC13.27□□□□□ -0.28
FOXA3P55318 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA3P55318 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA3P55318 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA3P55318 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
FOXA3P55318 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
FOXA3P55318 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 PPP1R14BP5-201ENST00000440334 435 ntBASIC13.27□□□□□ -0.29
FOXA3P55318 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC13.27□□□□□ -0.29
FOXA3P55318 KRT16P5-201ENST00000455284 522 ntBASIC13.27□□□□□ -0.29
FOXA3P55318 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
FOXA3P55318 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC13.27□□□□□ -0.29
FOXA3P55318 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
FOXA3P55318 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC13.27□□□□□ -0.29
FOXA3P55318 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms