Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGCS2P54868 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
HMGCS2P54868 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGCS2P54868 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.26■□□□□ 0.83
HMGCS2P54868 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
HMGCS2P54868 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.25■□□□□ 0.83
HMGCS2P54868 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC20.25■□□□□ 0.83
HMGCS2P54868 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
HMGCS2P54868 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
HMGCS2P54868 FAM58CP-201ENST00000435741 640 ntBASIC20.25■□□□□ 0.83
HMGCS2P54868 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC20.25■□□□□ 0.83
HMGCS2P54868 AP002472.1-201ENST00000577490 586 ntBASIC20.25■□□□□ 0.83
HMGCS2P54868 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC20.25■□□□□ 0.83
HMGCS2P54868 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC20.25■□□□□ 0.83
HMGCS2P54868 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.25■□□□□ 0.83
HMGCS2P54868 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.25■□□□□ 0.83
HMGCS2P54868 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC20.25■□□□□ 0.83
HMGCS2P54868 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
HMGCS2P54868 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
HMGCS2P54868 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HMGCS2P54868 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.25■□□□□ 0.83
HMGCS2P54868 PI4KAP1-204ENST00000612579 1703 ntBASIC20.24■□□□□ 0.83
HMGCS2P54868 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGCS2P54868 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGCS2P54868 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGCS2P54868 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
HMGCS2P54868 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGCS2P54868 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
HMGCS2P54868 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGCS2P54868 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
HMGCS2P54868 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.24■□□□□ 0.83
HMGCS2P54868 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGCS2P54868 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGCS2P54868 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGCS2P54868 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
HMGCS2P54868 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGCS2P54868 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGCS2P54868 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGCS2P54868 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGCS2P54868 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
HMGCS2P54868 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC20.24■□□□□ 0.83
HMGCS2P54868 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC20.24■□□□□ 0.83
HMGCS2P54868 AC027612.4-201ENST00000605371 583 ntBASIC20.24■□□□□ 0.83
HMGCS2P54868 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGCS2P54868 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGCS2P54868 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HMGCS2P54868 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGCS2P54868 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.24■□□□□ 0.83
HMGCS2P54868 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HMGCS2P54868 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
HMGCS2P54868 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HMGCS2P54868 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.23■□□□□ 0.83
HMGCS2P54868 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.23■□□□□ 0.83
HMGCS2P54868 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
HMGCS2P54868 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.23■□□□□ 0.83
HMGCS2P54868 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGCS2P54868 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGCS2P54868 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HMGCS2P54868 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGCS2P54868 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HMGCS2P54868 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC20.23■□□□□ 0.83
HMGCS2P54868 AL645939.2-201ENST00000427340 991 ntBASIC20.23■□□□□ 0.83
HMGCS2P54868 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
HMGCS2P54868 AC074386.1-202ENST00000463561 864 ntBASIC20.23■□□□□ 0.83
HMGCS2P54868 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC20.23■□□□□ 0.83
HMGCS2P54868 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
HMGCS2P54868 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC20.23■□□□□ 0.83
HMGCS2P54868 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC20.23■□□□□ 0.83
HMGCS2P54868 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC20.23■□□□□ 0.83
HMGCS2P54868 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HMGCS2P54868 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC20.23■□□□□ 0.83
HMGCS2P54868 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.23■□□□□ 0.83
HMGCS2P54868 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HMGCS2P54868 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGCS2P54868 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.22■□□□□ 0.83
HMGCS2P54868 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGCS2P54868 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.22■□□□□ 0.83
HMGCS2P54868 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGCS2P54868 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
HMGCS2P54868 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HMGCS2P54868 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HMGCS2P54868 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.22■□□□□ 0.83
HMGCS2P54868 MYCLP1-201ENST00000372451 1075 ntBASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms