Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SOX2P48431 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SOX2P48431 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC15.57■□□□□ 0.08
SOX2P48431 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
SOX2P48431 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SOX2P48431 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
SOX2P48431 REXO1L11P-201ENST00000620964 1927 ntBASIC15.56■□□□□ 0.08
SOX2P48431 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
SOX2P48431 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SOX2P48431 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.56■□□□□ 0.08
SOX2P48431 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
SOX2P48431 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SOX2P48431 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
SOX2P48431 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
SOX2P48431 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC15.56■□□□□ 0.08
SOX2P48431 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC15.56■□□□□ 0.08
SOX2P48431 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC15.56■□□□□ 0.08
SOX2P48431 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC15.56■□□□□ 0.08
SOX2P48431 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC15.56■□□□□ 0.08
SOX2P48431 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC15.56■□□□□ 0.08
SOX2P48431 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC15.56■□□□□ 0.08
SOX2P48431 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 MME-217ENST00000616757 1315 ntTSL 5 BASIC15.56■□□□□ 0.08
SOX2P48431 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC15.56■□□□□ 0.08
SOX2P48431 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC15.56■□□□□ 0.08
SOX2P48431 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SOX2P48431 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC15.56■□□□□ 0.08
SOX2P48431 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
SOX2P48431 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
SOX2P48431 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC15.56■□□□□ 0.08
SOX2P48431 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC15.56■□□□□ 0.08
SOX2P48431 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SOX2P48431 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
SOX2P48431 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
SOX2P48431 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX2P48431 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX2P48431 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX2P48431 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SOX2P48431 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
SOX2P48431 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SOX2P48431 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC15.55■□□□□ 0.08
SOX2P48431 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
SOX2P48431 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX2P48431 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
SOX2P48431 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX2P48431 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SOX2P48431 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
SOX2P48431 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX2P48431 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SOX2P48431 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX2P48431 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SOX2P48431 AC009947.2-201ENST00000444014 672 ntBASIC15.55■□□□□ 0.08
SOX2P48431 GXYLT1P6-201ENST00000456472 1187 ntBASIC15.55■□□□□ 0.08
SOX2P48431 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC15.55■□□□□ 0.08
SOX2P48431 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX2P48431 DENND3-207ENST00000518347 850 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX2P48431 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC15.55■□□□□ 0.08
SOX2P48431 FITM1-202ENST00000559294 800 ntBASIC15.55■□□□□ 0.08
SOX2P48431 C2orf69P3-201ENST00000565542 1120 ntBASIC15.55■□□□□ 0.08
SOX2P48431 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SOX2P48431 AC008687.5-201ENST00000593746 558 ntBASIC15.55■□□□□ 0.08
SOX2P48431 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC15.55■□□□□ 0.08
SOX2P48431 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX2P48431 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.55■□□□□ 0.08
SOX2P48431 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX2P48431 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SOX2P48431 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC15.55■□□□□ 0.08
SOX2P48431 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
SOX2P48431 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
SOX2P48431 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SOX2P48431 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.54■□□□□ 0.08
SOX2P48431 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SOX2P48431 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SOX2P48431 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
SOX2P48431 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
SOX2P48431 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC15.54■□□□□ 0.08
SOX2P48431 PBK-203ENST00000522944 1499 ntTSL 2 BASIC15.54■□□□□ 0.08
SOX2P48431 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
SOX2P48431 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SOX2P48431 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SOX2P48431 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms