Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
CXCL12P48061 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL12P48061 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL12P48061 MYCLP1-201ENST00000372451 1075 ntBASIC17.45■□□□□ 0.38
CXCL12P48061 AC002056.1-201ENST00000395613 760 ntBASIC17.45■□□□□ 0.38
CXCL12P48061 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.45■□□□□ 0.38
CXCL12P48061 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.45■□□□□ 0.38
CXCL12P48061 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC17.45■□□□□ 0.38
CXCL12P48061 AC093214.1-201ENST00000511688 1107 ntBASIC17.45■□□□□ 0.38
CXCL12P48061 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.45■□□□□ 0.38
CXCL12P48061 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.45■□□□□ 0.38
CXCL12P48061 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL12P48061 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.45■□□□□ 0.38
CXCL12P48061 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL12P48061 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.45■□□□□ 0.38
CXCL12P48061 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.45■□□□□ 0.38
CXCL12P48061 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL12P48061 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.45■□□□□ 0.38
CXCL12P48061 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL12P48061 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL12P48061 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL12P48061 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL12P48061 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.45■□□□□ 0.38
CXCL12P48061 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.45■□□□□ 0.38
CXCL12P48061 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL12P48061 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL12P48061 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CXCL12P48061 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.44■□□□□ 0.38
CXCL12P48061 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.44■□□□□ 0.38
CXCL12P48061 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL12P48061 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CXCL12P48061 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CXCL12P48061 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL12P48061 BCL2-203ENST00000589955 5011 ntBASIC17.44■□□□□ 0.38
CXCL12P48061 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL12P48061 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL12P48061 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL12P48061 AC116562.4-201ENST00000641316 2276 ntBASIC17.44■□□□□ 0.38
CXCL12P48061 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.44■□□□□ 0.38
CXCL12P48061 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CXCL12P48061 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL12P48061 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL12P48061 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL12P48061 AL627223.1-201ENST00000416693 442 ntBASIC17.44■□□□□ 0.38
CXCL12P48061 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.44■□□□□ 0.38
CXCL12P48061 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.44■□□□□ 0.38
CXCL12P48061 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL12P48061 INGX-202ENST00000489074 768 ntBASIC17.44■□□□□ 0.38
CXCL12P48061 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL12P48061 FAM86C2P-203ENST00000528684 1004 ntBASIC17.44■□□□□ 0.38
CXCL12P48061 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL12P48061 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.44■□□□□ 0.38
CXCL12P48061 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL12P48061 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.44■□□□□ 0.38
CXCL12P48061 DUX4L27-201ENST00000554796 1261 ntBASIC17.44■□□□□ 0.38
CXCL12P48061 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.44■□□□□ 0.38
CXCL12P48061 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.44■□□□□ 0.38
CXCL12P48061 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.44■□□□□ 0.38
CXCL12P48061 AC026120.1-201ENST00000611536 926 ntBASIC17.44■□□□□ 0.38
CXCL12P48061 AC009093.7-201ENST00000623853 1223 ntBASIC17.44■□□□□ 0.38
CXCL12P48061 Z92544.3-201ENST00000624747 417 ntBASIC17.44■□□□□ 0.38
CXCL12P48061 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.44■□□□□ 0.38
CXCL12P48061 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL12P48061 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL12P48061 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL12P48061 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.44■□□□□ 0.38
CXCL12P48061 AL590787.1-201ENST00000568856 1315 ntBASIC17.44■□□□□ 0.38
CXCL12P48061 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.44■□□□□ 0.38
CXCL12P48061 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CXCL12P48061 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CXCL12P48061 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.44■□□□□ 0.38
CXCL12P48061 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL12P48061 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.43■□□□□ 0.38
CXCL12P48061 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL12P48061 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL12P48061 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL12P48061 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CXCL12P48061 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL12P48061 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL12P48061 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL12P48061 ACTG1P4-201ENST00000425123 1122 ntBASIC17.43■□□□□ 0.38
CXCL12P48061 AC005237.2-201ENST00000434368 219 ntBASIC17.43■□□□□ 0.38
CXCL12P48061 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.43■□□□□ 0.38
CXCL12P48061 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CXCL12P48061 AC002558.1-201ENST00000488906 803 ntBASIC17.43■□□□□ 0.38
CXCL12P48061 AF228730.6-201ENST00000641497 218 ntBASIC17.43■□□□□ 0.38
CXCL12P48061 AC084121.3-201ENST00000641716 218 ntBASIC17.43■□□□□ 0.38
CXCL12P48061 AC105233.6-201ENST00000642093 218 ntBASIC17.43■□□□□ 0.38
CXCL12P48061 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CXCL12P48061 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL12P48061 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL12P48061 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL12P48061 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL12P48061 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.43■□□□□ 0.38
CXCL12P48061 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CXCL12P48061 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CXCL12P48061 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CXCL12P48061 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CXCL12P48061 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CXCL12P48061 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms