Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
COL9A1P20849 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL9A1P20849 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL9A1P20849 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL9A1P20849 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL9A1P20849 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC18.03■□□□□ 0.48
COL9A1P20849 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.03■□□□□ 0.48
COL9A1P20849 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.03■□□□□ 0.48
COL9A1P20849 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL9A1P20849 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.03■□□□□ 0.48
COL9A1P20849 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.03■□□□□ 0.48
COL9A1P20849 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
COL9A1P20849 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.03■□□□□ 0.48
COL9A1P20849 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL9A1P20849 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL9A1P20849 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL9A1P20849 FAM86MP-201ENST00000340703 885 ntBASIC18.03■□□□□ 0.48
COL9A1P20849 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
COL9A1P20849 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
COL9A1P20849 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.03■□□□□ 0.48
COL9A1P20849 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL9A1P20849 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC18.03■□□□□ 0.48
COL9A1P20849 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
COL9A1P20849 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.03■□□□□ 0.48
COL9A1P20849 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.03■□□□□ 0.48
COL9A1P20849 RN7SL190P-201ENST00000582519 257 ntBASIC18.03■□□□□ 0.48
COL9A1P20849 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL9A1P20849 AC004790.2-201ENST00000623588 572 ntBASIC18.03■□□□□ 0.48
COL9A1P20849 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
COL9A1P20849 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL9A1P20849 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
COL9A1P20849 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL9A1P20849 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL9A1P20849 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL9A1P20849 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.03■□□□□ 0.48
COL9A1P20849 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
COL9A1P20849 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL9A1P20849 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL9A1P20849 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL9A1P20849 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL9A1P20849 AIRN-201ENST00000601203 4374 ntBASIC18.02■□□□□ 0.48
COL9A1P20849 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.48
COL9A1P20849 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL9A1P20849 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
COL9A1P20849 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.02■□□□□ 0.48
COL9A1P20849 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.02■□□□□ 0.48
COL9A1P20849 DDX43P3-201ENST00000441064 443 ntBASIC18.02■□□□□ 0.48
COL9A1P20849 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC18.02■□□□□ 0.48
COL9A1P20849 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC18.02■□□□□ 0.48
COL9A1P20849 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.02■□□□□ 0.48
COL9A1P20849 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.02■□□□□ 0.48
COL9A1P20849 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC18.02■□□□□ 0.48
COL9A1P20849 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL9A1P20849 AL355338.1-201ENST00000612598 913 ntTSL 2 BASIC18.02■□□□□ 0.48
COL9A1P20849 AC006213.4-201ENST00000616184 634 ntBASIC18.02■□□□□ 0.48
COL9A1P20849 Metazoa_SRP.67-201ENST00000617099 296 ntBASIC18.02■□□□□ 0.48
COL9A1P20849 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.02■□□□□ 0.47
COL9A1P20849 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL9A1P20849 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL9A1P20849 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL9A1P20849 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.02■□□□□ 0.47
COL9A1P20849 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.02■□□□□ 0.47
COL9A1P20849 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL9A1P20849 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL9A1P20849 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
COL9A1P20849 AL031598.1-201ENST00000561511 1773 ntBASIC18.02■□□□□ 0.47
COL9A1P20849 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL9A1P20849 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL9A1P20849 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
COL9A1P20849 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL9A1P20849 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL9A1P20849 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL9A1P20849 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL9A1P20849 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL9A1P20849 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL9A1P20849 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL9A1P20849 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.01■□□□□ 0.47
COL9A1P20849 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.01■□□□□ 0.47
COL9A1P20849 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.01■□□□□ 0.47
COL9A1P20849 AC025580.3-201ENST00000617932 1424 ntBASIC18.01■□□□□ 0.47
COL9A1P20849 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL9A1P20849 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL9A1P20849 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL9A1P20849 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL9A1P20849 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
COL9A1P20849 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.01■□□□□ 0.47
COL9A1P20849 IGLL3P-201ENST00000412472 434 ntBASIC18.01■□□□□ 0.47
COL9A1P20849 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.01■□□□□ 0.47
COL9A1P20849 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.01■□□□□ 0.47
COL9A1P20849 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.01■□□□□ 0.47
COL9A1P20849 AC125807.1-201ENST00000483097 614 ntBASIC18.01■□□□□ 0.47
COL9A1P20849 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.01■□□□□ 0.47
COL9A1P20849 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
COL9A1P20849 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL9A1P20849 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL9A1P20849 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL9A1P20849 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL9A1P20849 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.01■□□□□ 0.47
COL9A1P20849 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.01■□□□□ 0.47
COL9A1P20849 AC010507.1-201ENST00000633895 436 ntBASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms