Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC18.18■□□□□ 0.5
COL6A3P12111 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.18■□□□□ 0.5
COL6A3P12111 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.18■□□□□ 0.5
COL6A3P12111 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A3P12111 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A3P12111 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.18■□□□□ 0.5
COL6A3P12111 KRT223P-202ENST00000449164 1292 ntBASIC18.18■□□□□ 0.5
COL6A3P12111 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC18.18■□□□□ 0.5
COL6A3P12111 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.18■□□□□ 0.5
COL6A3P12111 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.18■□□□□ 0.5
COL6A3P12111 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
COL6A3P12111 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.18■□□□□ 0.5
COL6A3P12111 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.18■□□□□ 0.5
COL6A3P12111 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A3P12111 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.18■□□□□ 0.5
COL6A3P12111 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
COL6A3P12111 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A3P12111 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A3P12111 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
COL6A3P12111 AC234783.1-201ENST00000441761 496 ntBASIC18.18■□□□□ 0.5
COL6A3P12111 TTTY23B-201ENST00000442790 549 ntBASIC18.18■□□□□ 0.5
COL6A3P12111 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC18.18■□□□□ 0.5
COL6A3P12111 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL6A3P12111 SPDYE12P-201ENST00000618416 771 ntBASIC18.18■□□□□ 0.5
COL6A3P12111 AL137060.1-201ENST00000618151 2648 ntBASIC18.17■□□□□ 0.5
COL6A3P12111 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
COL6A3P12111 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A3P12111 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
COL6A3P12111 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A3P12111 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.17■□□□□ 0.5
COL6A3P12111 STOM-203ENST00000538954 1257 ntTSL 5 BASIC18.17■□□□□ 0.5
COL6A3P12111 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC18.17■□□□□ 0.5
COL6A3P12111 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A3P12111 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A3P12111 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.17■□□□□ 0.5
COL6A3P12111 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A3P12111 BTBD6P1-201ENST00000412176 1267 ntBASIC18.17■□□□□ 0.5
COL6A3P12111 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC18.17■□□□□ 0.5
COL6A3P12111 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC18.17■□□□□ 0.5
COL6A3P12111 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC18.17■□□□□ 0.5
COL6A3P12111 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.17■□□□□ 0.5
COL6A3P12111 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.17■□□□□ 0.5
COL6A3P12111 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A3P12111 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
COL6A3P12111 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL6A3P12111 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.17■□□□□ 0.5
COL6A3P12111 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A3P12111 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
COL6A3P12111 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
COL6A3P12111 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.16■□□□□ 0.5
COL6A3P12111 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A3P12111 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
COL6A3P12111 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A3P12111 RPL28-204ENST00000431533 590 ntTSL 2 BASIC18.16■□□□□ 0.5
COL6A3P12111 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC18.16■□□□□ 0.5
COL6A3P12111 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
COL6A3P12111 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC18.16■□□□□ 0.5
COL6A3P12111 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.16■□□□□ 0.5
COL6A3P12111 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A3P12111 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A3P12111 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A3P12111 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
COL6A3P12111 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.16■□□□□ 0.5
COL6A3P12111 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.16■□□□□ 0.5
COL6A3P12111 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.16■□□□□ 0.5
COL6A3P12111 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.16■□□□□ 0.5
COL6A3P12111 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A3P12111 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.16■□□□□ 0.5
COL6A3P12111 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A3P12111 AC093677.2-201ENST00000600169 1863 ntBASIC18.16■□□□□ 0.5
COL6A3P12111 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.16■□□□□ 0.5
COL6A3P12111 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A3P12111 NSL1-201ENST00000366976 722 ntTSL 2 BASIC18.16■□□□□ 0.5
COL6A3P12111 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC18.16■□□□□ 0.5
COL6A3P12111 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A3P12111 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL6A3P12111 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC18.16■□□□□ 0.5
COL6A3P12111 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC18.16■□□□□ 0.5
COL6A3P12111 MIR4706-201ENST00000582134 82 ntBASIC18.16■□□□□ 0.5
COL6A3P12111 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.16■□□□□ 0.5
COL6A3P12111 CHCHD2P3-201ENST00000603038 451 ntBASIC18.16■□□□□ 0.5
COL6A3P12111 AC004840.1-201ENST00000636359 365 ntBASIC18.16■□□□□ 0.5
COL6A3P12111 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A3P12111 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.15■□□□□ 0.5
COL6A3P12111 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.15■□□□□ 0.5
COL6A3P12111 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A3P12111 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A3P12111 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A3P12111 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
COL6A3P12111 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
COL6A3P12111 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC18.15■□□□□ 0.5
COL6A3P12111 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.15■□□□□ 0.5
COL6A3P12111 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.15■□□□□ 0.5
COL6A3P12111 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A3P12111 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A3P12111 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A3P12111 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A3P12111 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
COL6A3P12111 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL6A3P12111 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms