Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC13.71□□□□□ -0.21
CXCL1P09341 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC13.71□□□□□ -0.21
CXCL1P09341 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CXCL1P09341 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC13.71□□□□□ -0.21
CXCL1P09341 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 SNCG-201ENST00000348795 684 ntTSL 2 BASIC13.71□□□□□ -0.21
CXCL1P09341 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC13.71□□□□□ -0.21
CXCL1P09341 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC13.71□□□□□ -0.21
CXCL1P09341 CDCA4P2-201ENST00000441182 718 ntBASIC13.71□□□□□ -0.21
CXCL1P09341 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC13.71□□□□□ -0.21
CXCL1P09341 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC13.71□□□□□ -0.21
CXCL1P09341 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC13.71□□□□□ -0.21
CXCL1P09341 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CXCL1P09341 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC13.71□□□□□ -0.21
CXCL1P09341 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC13.71□□□□□ -0.21
CXCL1P09341 SOX15-203ENST00000570788 1093 ntBASIC13.71□□□□□ -0.21
CXCL1P09341 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC13.71□□□□□ -0.21
CXCL1P09341 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CXCL1P09341 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
CXCL1P09341 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CXCL1P09341 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CXCL1P09341 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC13.71□□□□□ -0.22
CXCL1P09341 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CXCL1P09341 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CXCL1P09341 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
CXCL1P09341 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CXCL1P09341 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CXCL1P09341 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
CXCL1P09341 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
CXCL1P09341 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CXCL1P09341 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC13.7□□□□□ -0.22
CXCL1P09341 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC13.7□□□□□ -0.22
CXCL1P09341 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 SLC29A4P1-201ENST00000398760 971 ntBASIC13.7□□□□□ -0.22
CXCL1P09341 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 PPP1R14BP2-201ENST00000426284 444 ntBASIC13.7□□□□□ -0.22
CXCL1P09341 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC13.7□□□□□ -0.22
CXCL1P09341 KRT18P41-201ENST00000518924 1277 ntBASIC13.7□□□□□ -0.22
CXCL1P09341 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC13.7□□□□□ -0.22
CXCL1P09341 RARRES2P6-201ENST00000567333 442 ntBASIC13.7□□□□□ -0.22
CXCL1P09341 AC022517.1-201ENST00000592429 346 ntBASIC13.7□□□□□ -0.22
CXCL1P09341 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC13.7□□□□□ -0.22
CXCL1P09341 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CXCL1P09341 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC13.7□□□□□ -0.22
CXCL1P09341 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC13.7□□□□□ -0.22
CXCL1P09341 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CXCL1P09341 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
CXCL1P09341 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CXCL1P09341 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC13.7□□□□□ -0.22
CXCL1P09341 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC13.69□□□□□ -0.22
CXCL1P09341 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC13.69□□□□□ -0.22
CXCL1P09341 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
CXCL1P09341 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
CXCL1P09341 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC13.69□□□□□ -0.22
CXCL1P09341 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CXCL1P09341 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC13.69□□□□□ -0.22
CXCL1P09341 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
CXCL1P09341 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC13.69□□□□□ -0.22
CXCL1P09341 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
CXCL1P09341 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms