Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
COL3A1P02461 AL138688.1-201ENST00000624851 1594 ntBASIC23.17■■□□□ 1.3
COL3A1P02461 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL3A1P02461 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL3A1P02461 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
COL3A1P02461 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
COL3A1P02461 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
COL3A1P02461 RPS2P28-201ENST00000314255 741 ntBASIC23.17■■□□□ 1.3
COL3A1P02461 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC23.17■■□□□ 1.3
COL3A1P02461 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC23.17■■□□□ 1.3
COL3A1P02461 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
COL3A1P02461 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC23.17■■□□□ 1.3
COL3A1P02461 AC140113.2-201ENST00000604370 208 ntBASIC23.17■■□□□ 1.3
COL3A1P02461 AC008667.4-201ENST00000607370 168 ntBASIC23.17■■□□□ 1.3
COL3A1P02461 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC23.17■■□□□ 1.3
COL3A1P02461 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
COL3A1P02461 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC23.17■■□□□ 1.3
COL3A1P02461 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL3A1P02461 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC23.16■■□□□ 1.3
COL3A1P02461 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL3A1P02461 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC23.16■■□□□ 1.3
COL3A1P02461 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL3A1P02461 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL3A1P02461 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC23.16■■□□□ 1.3
COL3A1P02461 INIP-202ENST00000374236 874 ntTSL 2 BASIC23.16■■□□□ 1.3
COL3A1P02461 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL3A1P02461 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC23.16■■□□□ 1.3
COL3A1P02461 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC23.16■■□□□ 1.3
COL3A1P02461 AC023511.2-201ENST00000618803 211 ntBASIC23.16■■□□□ 1.3
COL3A1P02461 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC23.16■■□□□ 1.3
COL3A1P02461 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL3A1P02461 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC23.16■■□□□ 1.3
COL3A1P02461 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
COL3A1P02461 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
COL3A1P02461 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC23.15■■□□□ 1.3
COL3A1P02461 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC23.15■■□□□ 1.3
COL3A1P02461 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
COL3A1P02461 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
COL3A1P02461 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL3A1P02461 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL3A1P02461 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC23.15■■□□□ 1.3
COL3A1P02461 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC23.15■■□□□ 1.3
COL3A1P02461 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL3A1P02461 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
COL3A1P02461 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC23.15■■□□□ 1.3
COL3A1P02461 IGHV3-65-201ENST00000523210 341 ntBASIC23.15■■□□□ 1.3
COL3A1P02461 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC23.15■■□□□ 1.3
COL3A1P02461 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC23.15■■□□□ 1.3
COL3A1P02461 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
COL3A1P02461 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
COL3A1P02461 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
COL3A1P02461 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
COL3A1P02461 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
COL3A1P02461 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC23.14■■□□□ 1.3
COL3A1P02461 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.29
COL3A1P02461 MIR1199-201ENST00000621445 119 ntBASIC23.14■■□□□ 1.29
COL3A1P02461 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC23.14■■□□□ 1.29
COL3A1P02461 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC23.14■■□□□ 1.29
COL3A1P02461 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
COL3A1P02461 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
COL3A1P02461 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL3A1P02461 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
COL3A1P02461 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
COL3A1P02461 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL3A1P02461 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL3A1P02461 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC23.13■■□□□ 1.29
COL3A1P02461 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL3A1P02461 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC23.13■■□□□ 1.29
COL3A1P02461 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC23.13■■□□□ 1.29
COL3A1P02461 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL3A1P02461 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL3A1P02461 IGLL3P-201ENST00000412472 434 ntBASIC23.13■■□□□ 1.29
COL3A1P02461 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL3A1P02461 TERC-201ENST00000602385 541 ntBASIC23.13■■□□□ 1.29
COL3A1P02461 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
COL3A1P02461 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL3A1P02461 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL3A1P02461 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC23.13■■□□□ 1.29
COL3A1P02461 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
COL3A1P02461 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC23.13■■□□□ 1.29
COL3A1P02461 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL3A1P02461 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC23.12■■□□□ 1.29
COL3A1P02461 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL3A1P02461 OR7E47P-204ENST00000575924 449 ntBASIC23.12■■□□□ 1.29
COL3A1P02461 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC23.12■■□□□ 1.29
COL3A1P02461 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
COL3A1P02461 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
COL3A1P02461 TPR-209ENST00000613151 2478 ntTSL 5 BASIC23.12■■□□□ 1.29
COL3A1P02461 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC23.12■■□□□ 1.29
COL3A1P02461 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
COL3A1P02461 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
COL3A1P02461 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
COL3A1P02461 AP002414.1-201ENST00000391405 1147 ntBASIC23.11■■□□□ 1.29
COL3A1P02461 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL3A1P02461 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC23.11■■□□□ 1.29
COL3A1P02461 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC23.11■■□□□ 1.29
COL3A1P02461 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
COL3A1P02461 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
COL3A1P02461 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC23.11■■□□□ 1.29
COL3A1P02461 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms