Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTDNEP1O95476 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CTDNEP1O95476 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTDNEP1O95476 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CTDNEP1O95476 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTDNEP1O95476 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTDNEP1O95476 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTDNEP1O95476 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTDNEP1O95476 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTDNEP1O95476 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTDNEP1O95476 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTDNEP1O95476 FAM220CP-201ENST00000395253 831 ntBASIC20.4■□□□□ 0.86
CTDNEP1O95476 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CTDNEP1O95476 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CTDNEP1O95476 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.4■□□□□ 0.86
CTDNEP1O95476 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTDNEP1O95476 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.4■□□□□ 0.86
CTDNEP1O95476 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CTDNEP1O95476 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CTDNEP1O95476 AC016396.2-201ENST00000562575 1417 ntBASIC20.4■□□□□ 0.86
CTDNEP1O95476 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.4■□□□□ 0.86
CTDNEP1O95476 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
CTDNEP1O95476 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC20.4■□□□□ 0.86
CTDNEP1O95476 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.4■□□□□ 0.86
CTDNEP1O95476 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.4■□□□□ 0.86
CTDNEP1O95476 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.4■□□□□ 0.86
CTDNEP1O95476 TP73-AS1-210ENST00000637775 1455 ntBASIC20.4■□□□□ 0.86
CTDNEP1O95476 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTDNEP1O95476 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
CTDNEP1O95476 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CTDNEP1O95476 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.39■□□□□ 0.86
CTDNEP1O95476 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
CTDNEP1O95476 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CTDNEP1O95476 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CTDNEP1O95476 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CTDNEP1O95476 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.39■□□□□ 0.86
CTDNEP1O95476 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CTDNEP1O95476 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.85
CTDNEP1O95476 NSUN5P1-202ENST00000421140 1535 ntBASIC20.39■□□□□ 0.85
CTDNEP1O95476 NSUN5P2-203ENST00000457352 1529 ntBASIC20.39■□□□□ 0.85
CTDNEP1O95476 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC20.39■□□□□ 0.85
CTDNEP1O95476 AL353593.2-201ENST00000602529 1483 ntBASIC20.39■□□□□ 0.85
CTDNEP1O95476 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CTDNEP1O95476 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
CTDNEP1O95476 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
CTDNEP1O95476 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTDNEP1O95476 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
CTDNEP1O95476 MIR1224-201ENST00000408193 85 ntBASIC20.39■□□□□ 0.85
CTDNEP1O95476 KRT17P6-201ENST00000453795 1220 ntBASIC20.39■□□□□ 0.85
CTDNEP1O95476 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.39■□□□□ 0.85
CTDNEP1O95476 AC009533.2-201ENST00000543664 586 ntBASIC20.39■□□□□ 0.85
CTDNEP1O95476 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
CTDNEP1O95476 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
CTDNEP1O95476 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.39■□□□□ 0.85
CTDNEP1O95476 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC20.39■□□□□ 0.85
CTDNEP1O95476 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTDNEP1O95476 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTDNEP1O95476 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTDNEP1O95476 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.39■□□□□ 0.85
CTDNEP1O95476 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTDNEP1O95476 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CTDNEP1O95476 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTDNEP1O95476 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTDNEP1O95476 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC20.38■□□□□ 0.85
CTDNEP1O95476 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTDNEP1O95476 ARMC10P1-201ENST00000313754 855 ntBASIC20.38■□□□□ 0.85
CTDNEP1O95476 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTDNEP1O95476 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CTDNEP1O95476 LINC00265-3P-201ENST00000447588 903 ntBASIC20.38■□□□□ 0.85
CTDNEP1O95476 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC20.38■□□□□ 0.85
CTDNEP1O95476 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.38■□□□□ 0.85
CTDNEP1O95476 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CTDNEP1O95476 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.38■□□□□ 0.85
CTDNEP1O95476 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.38■□□□□ 0.85
CTDNEP1O95476 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTDNEP1O95476 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.38■□□□□ 0.85
CTDNEP1O95476 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CTDNEP1O95476 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTDNEP1O95476 INTS4P1-201ENST00000438455 1935 ntBASIC20.37■□□□□ 0.85
CTDNEP1O95476 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC20.37■□□□□ 0.85
CTDNEP1O95476 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CTDNEP1O95476 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CTDNEP1O95476 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.37■□□□□ 0.85
CTDNEP1O95476 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CTDNEP1O95476 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTDNEP1O95476 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTDNEP1O95476 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC20.37■□□□□ 0.85
CTDNEP1O95476 RCN1P2-201ENST00000398357 915 ntBASIC20.37■□□□□ 0.85
CTDNEP1O95476 ATP5G2P1-201ENST00000433580 426 ntBASIC20.37■□□□□ 0.85
CTDNEP1O95476 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.37■□□□□ 0.85
CTDNEP1O95476 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.37■□□□□ 0.85
CTDNEP1O95476 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
CTDNEP1O95476 STK25P1-201ENST00000585406 838 ntBASIC20.37■□□□□ 0.85
CTDNEP1O95476 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.37■□□□□ 0.85
CTDNEP1O95476 AD001527.2-201ENST00000622994 785 ntBASIC20.37■□□□□ 0.85
CTDNEP1O95476 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTDNEP1O95476 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.37■□□□□ 0.85
CTDNEP1O95476 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
CTDNEP1O95476 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTDNEP1O95476 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms