Protein–RNA interactions for Protein: O60885

BRD4, Bromodomain-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 1,362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRD4O60885 HS6ST1P1-201ENST00000481504 1234 ntBASIC24.34■■□□□ 1.49
BRD4O60885 RNA5SP416-201ENST00000516838 111 ntBASIC24.34■■□□□ 1.49
BRD4O60885 HOTTIP_1.1-201ENST00000620415 57 ntBASIC24.34■■□□□ 1.49
BRD4O60885 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
BRD4O60885 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
BRD4O60885 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC24.34■■□□□ 1.49
BRD4O60885 STX6-204ENST00000542060 4809 ntTSL 2 BASIC24.33■■□□□ 1.49
BRD4O60885 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
BRD4O60885 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC24.33■■□□□ 1.49
BRD4O60885 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
BRD4O60885 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.49
BRD4O60885 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
BRD4O60885 AC103564.2-201ENST00000432853 1299 ntBASIC24.33■■□□□ 1.49
BRD4O60885 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC24.33■■□□□ 1.49
BRD4O60885 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC24.33■■□□□ 1.49
BRD4O60885 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC24.33■■□□□ 1.49
BRD4O60885 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
BRD4O60885 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
BRD4O60885 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
BRD4O60885 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC24.33■■□□□ 1.49
BRD4O60885 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
BRD4O60885 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
BRD4O60885 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC24.33■■□□□ 1.48
BRD4O60885 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC24.33■■□□□ 1.48
BRD4O60885 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.48
BRD4O60885 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
BRD4O60885 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
BRD4O60885 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
BRD4O60885 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
BRD4O60885 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
BRD4O60885 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC24.32■■□□□ 1.48
BRD4O60885 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
BRD4O60885 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
BRD4O60885 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC24.32■■□□□ 1.48
BRD4O60885 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC24.32■■□□□ 1.48
BRD4O60885 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC24.32■■□□□ 1.48
BRD4O60885 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC24.32■■□□□ 1.48
BRD4O60885 HNRNPA1P28-201ENST00000424481 961 ntBASIC24.32■■□□□ 1.48
BRD4O60885 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
BRD4O60885 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
BRD4O60885 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC24.32■■□□□ 1.48
BRD4O60885 AC010460.3-201ENST00000511359 1579 ntBASIC24.32■■□□□ 1.48
BRD4O60885 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
BRD4O60885 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
BRD4O60885 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
BRD4O60885 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
BRD4O60885 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC24.32■■□□□ 1.48
BRD4O60885 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
BRD4O60885 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
BRD4O60885 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC24.32■■□□□ 1.48
BRD4O60885 KRT8P47-201ENST00000604727 1398 ntBASIC24.32■■□□□ 1.48
BRD4O60885 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
BRD4O60885 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
BRD4O60885 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
BRD4O60885 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
BRD4O60885 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC24.31■■□□□ 1.48
BRD4O60885 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
BRD4O60885 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
BRD4O60885 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC24.31■■□□□ 1.48
BRD4O60885 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
BRD4O60885 PMP22-202ENST00000395936 816 ntTSL 3 BASIC24.31■■□□□ 1.48
BRD4O60885 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC24.31■■□□□ 1.48
BRD4O60885 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC24.31■■□□□ 1.48
BRD4O60885 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC24.31■■□□□ 1.48
BRD4O60885 PCDHB18P-201ENST00000524813 2368 ntBASIC24.31■■□□□ 1.48
BRD4O60885 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
BRD4O60885 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC24.31■■□□□ 1.48
BRD4O60885 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
BRD4O60885 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
BRD4O60885 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
BRD4O60885 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
BRD4O60885 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
BRD4O60885 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC24.31■■□□□ 1.48
BRD4O60885 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC24.31■■□□□ 1.48
BRD4O60885 AL691403.2-201ENST00000618460 490 ntBASIC24.3■■□□□ 1.48
BRD4O60885 AC055717.3-201ENST00000622967 595 ntBASIC24.3■■□□□ 1.48
BRD4O60885 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC24.3■■□□□ 1.48
BRD4O60885 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC24.3■■□□□ 1.48
BRD4O60885 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
BRD4O60885 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC24.3■■□□□ 1.48
BRD4O60885 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
BRD4O60885 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
BRD4O60885 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC24.3■■□□□ 1.48
BRD4O60885 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC24.3■■□□□ 1.48
BRD4O60885 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC24.3■■□□□ 1.48
BRD4O60885 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
BRD4O60885 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
BRD4O60885 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
BRD4O60885 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC24.3■■□□□ 1.48
BRD4O60885 LETM1P2-201ENST00000597330 2178 ntBASIC24.3■■□□□ 1.48
BRD4O60885 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
BRD4O60885 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
BRD4O60885 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC24.29■■□□□ 1.48
BRD4O60885 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
BRD4O60885 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC24.29■■□□□ 1.48
BRD4O60885 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC24.29■■□□□ 1.48
BRD4O60885 AC002347.1-201ENST00000569543 541 ntBASIC24.29■■□□□ 1.48
BRD4O60885 MIR1199-201ENST00000621445 119 ntBASIC24.29■■□□□ 1.48
BRD4O60885 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
BRD4O60885 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms